| Protein: | gi|17104777, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 365 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17104777, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
317.0 | [0..1] | [365..1] |
|
Region A: Residues: [1-365] |
1 11 21 31 41 51
| | | | | |
1 MKLTVKTLKG SHFEIRVLPS DTIMAVKKNI EDSQGKDNYP CGQQLLIHNG KVLKDETSLV 60
61 ENKVTEEGFL VVMLSKSKSG GSAGQASVQP VSATTSSTKP AAPSTTQSSP VPASPIPAQE 120
121 QPAAQTDTYG QAASTLVSGS SLEQMVQQIM EMGGGSWDKE TVTRALRAAY NNPERAVDYL 180
181 YSGIPQTAEV AVPVPEAQIA GSGAAPVAPA SGGPNSSPLD LFPQETVAAA GSGDLGTLEF 240
241 LRNNDQFQQL RTMVHSNPQI LQPMLQELGK QNPQLLRLIQ ENQAEFLQLV NEPYEGSDGE 300
301 GDMFDQPEQE MPHAINVTPA EQEAIQRLEA MGFDRALVIE AFLACDRNEE LAANYLLENS 360
361 GDFED
|
| Detection Method: |  |
| Confidence: | 66.30103 |
| Match: | 1oqyA |
| Description: | Structure of the DNA repair protein hHR23a |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| damaged DNA binding | 4.47463096529128 | bayes_pls_golite062009 |
| peptidase activity | 4.11397638448668 | bayes_pls_golite062009 |
| peptidase activity, acting on L-amino acid peptides | 3.93085931991298 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 3.71144418714309 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 3.30801071565148 | bayes_pls_golite062009 |
| DNA binding | 2.85587480999529 | bayes_pls_golite062009 |
| nucleic acid binding | 2.77967439078472 | bayes_pls_golite062009 |
| hydrolase activity | 2.77871378503369 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 2.72499875710239 | bayes_pls_golite062009 |
| binding | 2.47268310088535 | bayes_pls_golite062009 |
| protein tag | 2.08744267430616 | bayes_pls_golite062009 |
| ligase activity, forming carbon-nitrogen bonds | 2.00465244189638 | bayes_pls_golite062009 |
| small conjugating protein binding | 1.96968415005987 | bayes_pls_golite062009 |
| ubiquitin binding | 1.89720476649564 | bayes_pls_golite062009 |
| transcription regulator activity | 1.42747465816672 | bayes_pls_golite062009 |
| protein binding | 1.15687168153762 | bayes_pls_golite062009 |
| SUMO ligase activity | 0.80391127659342 | bayes_pls_golite062009 |
| small conjugating protein-specific protease activity | 0.59805675560068 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.570143717979967 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 0.536856055841234 | bayes_pls_golite062009 |
| kinase activity | 0.506057697290914 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.410719674374641 | bayes_pls_golite062009 |
| ubiquitin-specific protease activity | 0.387487703339719 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.366426020658587 | bayes_pls_golite062009 |
| protein kinase activity | 0.325253662829604 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.249928925871521 | bayes_pls_golite062009 |
| transferase activity | 0.236208643697075 | bayes_pls_golite062009 |
| polyubiquitin binding | 0.126322128629172 | bayes_pls_golite062009 |
