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View Structure Prediction Details

Protein: NDUS1_ARATH
Organism: Arabidopsis thaliana
Length: 748 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NDUS1_ARATH.

Description E-value Query
Range		 Subject
Range
gi|78044647, gi|... - gi|78044647|ref|YP_359587.1| NAD-dependent formate dehydrogenase, alpha subunit, selenocysteine-cont...
 627.0 [0..74] [747..4]

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Predicted Domain #1
Region A:
Residues: [1-71] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLGILASRT IRPASRLLQS QTSNFFLRTI VSKPELQSPE SAAVSEPEPP TQILPPRNPV  60
   61 GGARVHFSNP E

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 12.30103
Match: 2piaA
Description: PHTHALATE DIOXYGENASE REDUCTASE: A MODULAR STRUCTURE FOR ELECTRON TRANSFER FROM PYRIDINE NUCLEOTIDES TO [2FE-2S]
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [72-748] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DAIEVFVDGY AVKVPKGFTV LQACEVAGVD IPRFCYHSRL SIAGNCRMCL VEVEKSPKPV  60
   61 ASCAMPALPG MKIKTDTPIA KKAREGVMEF LLMNHPLDCP ICDQGGECDL QDQSMAFGSD 120
  121 RGRFTEMKRS VVDKNLGPLV KTVMTRCIQC TRCVRFASEV AGVQDLGILG RGSGEEIGTY 180
  181 VEKLMTSELS GNVIDICPVG ALTSKPFAFK ARNWELKATE TIDVSDAVGS NIRVDSRGPE 240
  241 VMRIIPRLNE DINEEWISDK TRFCYDGLKR QRLSDPMIRD SDGRFKAVSW RDALAVVGDI 300
  301 IHQVKPDEIV GVAGQLSDAE SMMVLKDFVN RMGSDNVWCE GTAAGVDADL RYSYLMNTSI 360
  361 SGLENADLFL LIGTQPRVEA AMVNARICKT VRASNAKVGY VGPPAEFNYD CKHLGTGPDT 420
  421 LKEIAEGRHP FCTALKNAKN PAIIVGAGLF NRTDKNAILS SVESIAQANN VVRPDWNGLN 480
  481 FLLQYAAQAA ALDLGLIQQS AKALESAKFV YLMGADDVNV DKIPKDAFVV YQGHHGDKAV 540
  541 YRANVILPAS AFTEKEGTYE NTEGFTQQTV PAVPTVGDAR DDWKIVRALS EVSGVKLPYN 600
  601 SIEGVRSRIK SVAPNLVHTD EREPAAFGPS LKPECKEAMS TTPFQTVVEN FYMTNSITRA 660
  661 SKIMAQCSAV LLKKPFV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 94.0
Match: 2fug3
Description: Crystal structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
NADH dehydrogenase activity 8.57020397959255 bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH 8.38566609923386 bayes_pls_golite062009
NADH dehydrogenase (ubiquinone) activity 8.21082857163161 bayes_pls_golite062009
NADH dehydrogenase (quinone) activity 7.52220758347541 bayes_pls_golite062009
oxidoreductase activity 7.16286065347789 bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor 7.03780998761655 bayes_pls_golite062009
formate dehydrogenase activity 4.68407412780362 bayes_pls_golite062009
4 iron, 4 sulfur cluster binding 3.54243134597505 bayes_pls_golite062009
oxidoreduction-driven active transmembrane transporter activity 3.29174700910768 bayes_pls_golite062009
succinate dehydrogenase activity 3.27019699125535 bayes_pls_golite062009
electron carrier activity 2.86867645862628 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors 2.73204059194206 bayes_pls_golite062009
metal cluster binding 2.57357653703854 bayes_pls_golite062009
iron-sulfur cluster binding 2.57357653703854 bayes_pls_golite062009
nitrate reductase activity 2.20600951698793 bayes_pls_golite062009
catalytic activity 1.93875927205186 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH group of donors, quinone or similar compound as acceptor 1.87673954208357 bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors 1.84836110501265 bayes_pls_golite062009
carboxy-lyase activity 1.54181416413094 bayes_pls_golite062009
oxidoreductase activity, acting on other nitrogenous compounds as donors 1.12492792673137 bayes_pls_golite062009
binding 1.0770649921334 bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor 0.737415967372169 bayes_pls_golite062009
carbon-carbon lyase activity 0.67478911167421 bayes_pls_golite062009
transition metal ion binding 0.614505320206825 bayes_pls_golite062009
ferrous iron binding 0.599635746381861 bayes_pls_golite062009
cation binding 0.292059992813768 bayes_pls_golite062009
metal ion binding 0.292059992813768 bayes_pls_golite062009
ion binding 0.285849308897776 bayes_pls_golite062009
protein binding 0.128023487683923 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle