| Protein: | KU70_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 621 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KU70_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
568.0 | [0..21] | [620..28] |
|
Region A: Residues: [1-621] |
1 11 21 31 41 51
| | | | | |
1 MELDPDDVFR DEDEDPENDF FQEKEASKEF VVYLIDASPK MFCSTCPSEE EDKQESHFHI 60
61 AVSCIAQSLK AHIINRSNDE IAICFFNTRE KKNLQDLNGV YVFNVPERDS IDRPTARLIK 120
121 EFDLIEESFD KEIGSQTGIV SDSRENSLYS ALWVAQALLR KGSLKTADKR MFLFTNEDDP 180
181 FGSMRISVKE DMTRTTLQRA KDAQDLGISI ELLPLSQPDK QFNITLFYKD LIGLNSDELT 240
241 EFMPSVGQKL EDMKDQLKKR VLAKRIAKRI TFVICDGLSI ELNGYALLRP AIPGSITWLD 300
301 STTNLPVKVE RSYICTDTGA IMQDPIQRIQ PYKNQNIMFT VEELSQVKRI STGHLRLLGF 360
361 KPLSCLKDYH NLKPSTFLYP SDKEVIGSTR AFIALHRSMI QLERFAVAFY GGTTPPRLVA 420
421 LVAQDEIESD GGQVEPPGIN MIYLPYANDI RDIDELHSKP GVAAPRASDD QLKKASALMR 480
481 RLELKDFSVC QFANPALQRH YAILQAIALD ENELRETRDE TLPDEEGMNR PAVVKAIEQF 540
541 KQSIYGDDPD EESDSGAKEK SKKRKAGDAD DGKYDYIELA KTGKLKDLTV VELKTYLTAN 600
601 NLLVSGKKEV LINRILTHIG K
|
| Detection Method: |  |
| Confidence: | 157.0 |
| Match: | 1jeqA |
| Description: | DNA binding C-terminal domain of ku70; Ku70 subunit |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| double-stranded telomeric DNA binding | 8.64621483095491 | bayes_pls_golite062009 |
| DNA-dependent protein kinase activity | 7.33495559751688 | bayes_pls_golite062009 |
| telomeric DNA binding | 5.16364366157397 | bayes_pls_golite062009 |
| transcription regulator activity | 3.05720838352689 | bayes_pls_golite062009 |
| promoter binding | 3.01492777192913 | bayes_pls_golite062009 |
| transcription activator activity | 2.87080577911324 | bayes_pls_golite062009 |
| binding | 2.75824485094584 | bayes_pls_golite062009 |
| protein binding | 2.58357303743968 | bayes_pls_golite062009 |
| nucleic acid binding | 2.08531850924748 | bayes_pls_golite062009 |
| DNA binding | 1.91667917801679 | bayes_pls_golite062009 |
| transcription repressor activity | 1.69798374416156 | bayes_pls_golite062009 |
| transcription factor activity | 1.37299910766941 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 0.985753648509262 | bayes_pls_golite062009 |
| protein complex binding | 0.94234534987624 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.914051610867509 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.814975395718076 | bayes_pls_golite062009 |
| protein dimerization activity | 0.73404855126602 | bayes_pls_golite062009 |
| DNA helicase activity | 0.720743494912414 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.702777559747981 | bayes_pls_golite062009 |
| protein heterodimerization activity | 0.64812784969409 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 0.506640285146188 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.450760554291027 | bayes_pls_golite062009 |
| structural molecule activity | 0.375125487765613 | bayes_pls_golite062009 |
| receptor binding | 0.234020194580985 | bayes_pls_golite062009 |
| transcription factor binding | 0.184852480703492 | bayes_pls_golite062009 |
| protein C-terminus binding | 0.15516806759612 | bayes_pls_golite062009 |
| identical protein binding | 0.125363466534611 | bayes_pls_golite062009 |
| collagen binding | 0.113837148027681 | bayes_pls_golite062009 |
