| Protein: | HTR12_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 178 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HTR12_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
226.0 | [0..41] | [174..44] |
|
Region A: Residues: [1-178] |
1 11 21 31 41 51
| | | | | |
1 MARTKHRVTR SQPRNQTDAA GASSSQAAGP TTTPTRRGGE GGDNTQQTNP TTSPATGTRR 60
61 GAKRSRQAMP RGSQKKSYRY RPGTVALKEI RHFQKQTNLL IPAASFIREV RSITHMLAPP 120
121 QINRWTAEAL VALQEAAEDY LVGLFSDSML CAIHARRVTL MRKDFELARR LGGKGRPW
|
| Detection Method: |  |
| Confidence: | 51.154902 |
| Match: | 1u35A |
| Description: | Crystal structure of the nucleosome core particle containing the histone domain of macroH2A |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| general RNA polymerase II transcription factor activity | 5.34463638471509 | bayes_pls_golite062009 |
| DNA binding | 4.49118409263799 | bayes_pls_golite062009 |
| nucleic acid binding | 4.35201412176948 | bayes_pls_golite062009 |
| transcription regulator activity | 4.08606081850613 | bayes_pls_golite062009 |
| binding | 3.27510691458843 | bayes_pls_golite062009 |
| centromeric DNA binding | 2.60445660474495 | bayes_pls_golite062009 |
| transcription factor activity | 2.51581622888695 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.38228606466152 | bayes_pls_golite062009 |
| transcription repressor activity | 2.3574713307436 | bayes_pls_golite062009 |
| transcription corepressor activity | 1.30859203490073 | bayes_pls_golite062009 |
| transcription initiation factor activity | 1.28291819488375 | bayes_pls_golite062009 |
| transcription activator activity | 1.25487495162413 | bayes_pls_golite062009 |
| transcription factor binding | 1.15204005455906 | bayes_pls_golite062009 |
| protein binding | 1.07873333188144 | bayes_pls_golite062009 |
| transcription cofactor activity | 1.01502031330902 | bayes_pls_golite062009 |
| lysine N-acetyltransferase activity | 0.586540591759885 | bayes_pls_golite062009 |
| histone acetyltransferase activity | 0.586540591759885 | bayes_pls_golite062009 |
| histone binding | 0.218942897869955 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.0885263144317296 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.0852726470007639 | bayes_pls_golite062009 |
