Protein: | nhr-116 |
Organism: | Caenorhabditis elegans |
Length: | 448 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nhr-116.
Description | E-value | Query Range |
Subject Range |
|
292.0 | [0..4] | [443..20] |
Region A: Residues: [1-175] |
1 11 21 31 41 51 | | | | | | 1 MIHSRCSTST DEPVDLPEFS LSPPALSAEP STSSPSKKSI GSRVERPTEC LVCGRSAHGY 60 61 HYNVASCNGC KTFFRRMCLS GRSFSCKLDR DCFDLTKRKT PAKCRACRLQ RCLSVGMDPG 120 121 AMEVDEKAAS SSTYKSLLKR SKVKEEDQDD CQIIALVSNN SKKPWELVKS LENKL |
Detection Method: | |
Confidence: | 19.69897 |
Match: | 2hanB |
Description: | No description for 2hanB was found. |
Term | Confidence | Notes |
transcription regulator activity | 4.00967542385368 | bayes_pls_golite062009 |
DNA binding | 3.60745514727532 | bayes_pls_golite062009 |
nucleic acid binding | 3.47256374293954 | bayes_pls_golite062009 |
binding | 2.96409924710655 | bayes_pls_golite062009 |
transcription activator activity | 2.9532663930699 | bayes_pls_golite062009 |
transcription factor activity | 2.90769972671972 | bayes_pls_golite062009 |
sequence-specific DNA binding | 2.72967350701574 | bayes_pls_golite062009 |
protein binding | 2.44501340584871 | bayes_pls_golite062009 |
RNA polymerase II transcription factor activity | 2.40923942043513 | bayes_pls_golite062009 |
transcription repressor activity | 1.88834375049208 | bayes_pls_golite062009 |
ligand-dependent nuclear receptor activity | 1.49515149729803 | bayes_pls_golite062009 |
transcription factor binding | 1.38523780690867 | bayes_pls_golite062009 |
specific RNA polymerase II transcription factor activity | 1.26452462867497 | bayes_pls_golite062009 |
general RNA polymerase II transcription factor activity | 0.68943696300126 | bayes_pls_golite062009 |
transcription cofactor activity | 0.58115018700114 | bayes_pls_golite062009 |
receptor activity | 0.230063209127305 | bayes_pls_golite062009 |
catalytic activity | 0.101795606736461 | bayes_pls_golite062009 |
Region A: Residues: [176-448] |
1 11 21 31 41 51 | | | | | | 1 QNTIDMLVYL ESKVEKFRKS SYNPDWNEMD GLEFLLKTES RIGFADRYGP MKECPIRSDQ 60 61 KKLPPPPHPS SAKFGGPKHN PDRKQWMYFN LFTTVEYAKT FMFFHRLDSR DKFILTKHIT 120 121 LSCMNLHLSY ISVARKSEVL TNPDGTSFPS RTQAHYTSKT MSVAPLIRYQ IQYIEYTLLK 180 181 AICLCNPAVP DLSHHAQEIL SKEREKYADA LFDYCLRTRN DGPSHFAQLM QIFDVLERQQ 240 241 KLQKDLHLLY ILPTLAHAPK CLVIRVIEDI MES |
Detection Method: | |
Confidence: | 34.154902 |
Match: | 1xdkB |
Description: | Crystal Structure of the RARbeta/RXRalpha Ligand Binding Domain Heterodimer in Complex with 9-cis Retinoic Acid and a Fragment of the TRAP220 Coactivator |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
transcription regulator activity | 5.53061626347066 | bayes_pls_golite062009 |
DNA binding | 4.92165988569962 | bayes_pls_golite062009 |
nucleic acid binding | 4.78024150262074 | bayes_pls_golite062009 |
transcription activator activity | 4.53302455129434 | bayes_pls_golite062009 |
sequence-specific DNA binding | 4.11614358606713 | bayes_pls_golite062009 |
transcription factor activity | 4.0914094580319 | bayes_pls_golite062009 |
ligand-dependent nuclear receptor activity | 3.89763470197726 | bayes_pls_golite062009 |
binding | 3.85318710398432 | bayes_pls_golite062009 |
transcription repressor activity | 3.83878598697109 | bayes_pls_golite062009 |
protein binding | 3.21524787168952 | bayes_pls_golite062009 |
transcription factor binding | 2.68044489404568 | bayes_pls_golite062009 |
receptor activity | 2.62895787183554 | bayes_pls_golite062009 |
RNA polymerase II transcription factor activity | 2.38308182853979 | bayes_pls_golite062009 |
steroid hormone receptor activity | 2.30195937604451 | bayes_pls_golite062009 |
molecular transducer activity | 2.04709877069886 | bayes_pls_golite062009 |
signal transducer activity | 2.04709877069886 | bayes_pls_golite062009 |
transcription cofactor activity | 1.73827483890179 | bayes_pls_golite062009 |
nuclear hormone receptor binding | 1.60419100774741 | bayes_pls_golite062009 |
retinoic acid receptor binding | 1.59968001933699 | bayes_pls_golite062009 |
retinoid X receptor binding | 1.45560845709347 | bayes_pls_golite062009 |
specific RNA polymerase II transcription factor activity | 1.34794228300778 | bayes_pls_golite062009 |
transcription coactivator activity | 1.23834725221597 | bayes_pls_golite062009 |
transcription corepressor activity | 0.995333369475571 | bayes_pls_golite062009 |
hormone binding | 0.895172563790297 | bayes_pls_golite062009 |
retinoic acid receptor activity | 0.853869057774515 | bayes_pls_golite062009 |
protein dimerization activity | 0.797229273848179 | bayes_pls_golite062009 |
hormone receptor binding | 0.74373733735458 | bayes_pls_golite062009 |
steroid binding | 0.687964316511791 | bayes_pls_golite062009 |
promoter binding | 0.58091332905515 | bayes_pls_golite062009 |
protein N-terminus binding | 0.57701453824007 | bayes_pls_golite062009 |
thyroid hormone receptor activity | 0.49784404390361 | bayes_pls_golite062009 |
protein heterodimerization activity | 0.45265806678057 | bayes_pls_golite062009 |
receptor binding | 0.418843034756825 | bayes_pls_golite062009 |
ligand-regulated transcription factor activity | 0.202197503742221 | bayes_pls_golite062009 |
RNA polymerase II transcription factor activity, enhancer binding | 0.15737167800277 | bayes_pls_golite062009 |
catalytic activity | 0.106902059021677 | bayes_pls_golite062009 |
lipid binding | 0.100602722157819 | bayes_pls_golite062009 |