| Protein: | gi|27311575, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 714 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|27311575, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
482.0 | [0..43] | [673..914] |
|
|
477.0 | [0..72] | [677..607] |
|
|
473.0 | [0..14] | [699..523] |
|
|
465.0 | [0..52] | [702..796] |
|
|
463.0 | [0..4] | [712..3] |
|
|
462.0 | [0..80] | [699..1049] |
|
|
457.0 | [0..74] | [645..952] |
|
Region A: Residues: [1-150] |
1 11 21 31 41 51
| | | | | |
1 MAAVVDIDVL TAQLGINWSD VNLDSIQLPP GNDFGIESDD ESVYQDDQSE FDTGFGNIIV 60
61 VDHLPVVPKE KFEKLEGVVK KIYNQLGVIK ENGLLMPVDP DTKMTLGYCF IEFNTPQEAQ 120
121 NAKEKSHGYK LDKSHIFAVN MFDDFDRLMN
|
| Detection Method: |  |
| Confidence: | 12.69897 |
| Match: | 2nlwA |
| Description: | No description for 2nlwA was found. |
|
Region A: Residues: [151-238] |
1 11 21 31 41 51
| | | | | |
1 VKEEWEPPQE RPYVPGENLQ KWLTDDKARD QLVIRFGHDT EVYWNDARQK KPEPVHKRSY 60
61 WTESYVQWSP IGTYLVTLHK QGAAVWGG
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.804 | b.114.1 | N-utilization substance G protein NusG, insert domain |
| View | Download | 0.804 | b.114.1 | N-utilization substance G protein NusG, insert domain |
| View | Download | 0.788 | b.1.2 | Fibronectin type III |
| View | Download | 0.788 | b.1.2 | Fibronectin type III |
| View | Download | 0.773 | b.38.5 | Description not found. |
| View | Download | 0.738 | b.114.1 | N-utilization substance G protein NusG, insert domain |
| View | Download | 0.738 | b.114.1 | N-utilization substance G protein NusG, insert domain |
| View | Download | 0.736 | b.1.2 | Fibronectin type III |
| View | Download | 0.711 | b.1.18 | E set domains |
| View | Download | 0.541 | b.1.18 | E set domains |
| View | Download | 0.488 | b.1.18 | E set domains |
| View | Download | 0.485 | b.1.18 | E set domains |
| View | Download | 0.437 | b.1.18 | E set domains |
| View | Download | 0.419 | b.1.18 | E set domains |
|
Region A: Residues: [239-588] |
1 11 21 31 41 51
| | | | | |
1 ADTFTRLMRY QHSMVKLVDF SPGEKYLVTY HSQEPSNPRD ASKVEIKVFD VRTGRMMRDF 60
61 KGSADEFSIG GPGGVAGASW PVFRWAGGKD DKYFAKLSKN TISVYETETF SLIDKKSMKV 120
121 DNVVDICWSP TDSILSLFVP EQGGGNQPAK VALVQIPSKV ELRQKNLFSV SDCKMYWQSS 180
181 GEYLAVKVDR YTKTKKSTYS GFELFRIKER DIPIEVLELD NKNDKIIAFA WEPKGHRFAV 240
241 IHGDQPRPDV SFYSMKTAQN TGRVSKLATL KAKQANALFW SPTGKYIILA GLKGFNGQLE 300
301 FFNVDELETM ATAEHFMATD IEWDPTGRYV ATSVTTVHEM ENGFTIWSFN
|
| Detection Method: | |
| Confidence: | 60.39794 |
| Match: | 1vyhC |
| Description: | PAF-AH Holoenzyme: Lis1/Alfa2 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [589-632] |
1 11 21 31 41 51
| | | | | |
1 GNMVYRILKD HFFQLAWRPR PASFLTAEKE EEIAKNLRNY SKRY
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.376 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.361 | N/A | N/A | a.4.8 | Ribosomal protein S18 |
| View | Download | 0.349 | N/A | N/A | a.37.1 | A DNA-binding domain in eukaryotic transcription factors |
| View | Download | 0.349 | N/A | N/A | a.37.1 | A DNA-binding domain in eukaryotic transcription factors |
| View | Download | 0.337 | N/A | N/A | a.140.1 | LEM domain |
| View | Download | 0.337 | N/A | N/A | a.140.1 | LEM domain |
| View | Download | 0.333 | N/A | N/A | a.4.8 | Ribosomal protein S18 |
| View | Download | 0.327 | N/A | N/A | a.4.10 | N-terminal Zn binding domain of HIV integrase |
| View | Download | 0.308 | N/A | N/A | a.144.1 | PABC (PABP) domain |
| View | Download | 0.288 | N/A | N/A | a.140.1 | LEM domain |
| View | Download | 0.247 | N/A | N/A | a.37.1 | A DNA-binding domain in eukaryotic transcription factors |
| View | Download | 0.247 | N/A | N/A | a.37.1 | A DNA-binding domain in eukaryotic transcription factors |
| View | Download | 0.246 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.229 | N/A | N/A | a.4.1 | Homeodomain-like |
|
Region A: Residues: [633-714] |
1 11 21 31 41 51
| | | | | |
1 EAEDQDVSLL LSEQDREKRR ALNEEWQKWV MQWKSLHEEE KLVRQNLRDG EVSDVEEDEY 60
61 EAKEVEFEDL IDVTEEIVQE LM
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.912 | a.118.1 | ARM repeat |
| View | Download | 0.910 | a.7.16 | Description not found. |
| View | Download | 0.899 | a.7.16 | Description not found. |
| View | Download | 0.881 | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.879 | a.46.1 | Methionine synthase domain |
| View | Download | 0.872 | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.858 | a.2.1 | GreA transcript cleavage protein, N-terminal domain |
| View | Download | 0.844 | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.829 | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.706 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.606 | a.7.8 | GAT domain |
| View | Download | 0.527 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.503 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.442 | a.7.8 | GAT domain |
