YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|27311575, gi\|...
Organism:	Arabidopsis thaliana
Length:	714 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|27311575, gi|....

Description	E-value	Query Range	Subject Range
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	482.0	[0..43]	[673..914]
gi\|37523925, gi\|... - gi\|37523925\|ref\|NP_927302.1\| WD repeat-containing protein [Gloeobacter violaceus PCC 7421], gi\|35214...	477.0	[0..72]	[677..607]
gi\|23128312, gi\|... - gi\|23128312\|ref\|ZP_00110163.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668169...	473.0	[0..14]	[699..523]
gi\|148658115, gi... - gi\|148658115\|ref\|YP_001278320.1\| NB-ARC domain-containing protein [Roseiflexus sp. RS-1], gi\|1485702...	465.0	[0..52]	[702..796]
EIF3B_ARATH - Eukaryotic translation initiation factor 3 subunit B OS=Arabidopsis thaliana GN=TIF3B1 PE=1 SV=1	463.0	[0..4]	[712..3]
gi\|75701503, gi\|... - gi\|75907778\|ref\|YP_322074.1\| ribosome assembly protein 4 (RSA4) [Anabaena variabilis ATCC 29413], gi...	462.0	[0..80]	[699..1049]
gi\|116200089, gi... - gi\|88179479\|gb\|EAQ86947.1\| hypothetical protein CHGG_08200 [Chaetomium globosum CBS 148.51], gi\|1162...	457.0	[0..74]	[645..952]

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Predicted Domain #1

Region A:
Residues: [1-150]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAVVDIDVL TAQLGINWSD VNLDSIQLPP GNDFGIESDD ESVYQDDQSE FDTGFGNIIV  60
   61 VDHLPVVPKE KFEKLEGVVK KIYNQLGVIK ENGLLMPVDP DTKMTLGYCF IEFNTPQEAQ 120
  121 NAKEKSHGYK LDKSHIFAVN MFDDFDRLMN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.69897
Match:	2nlwA
Description:	No description for 2nlwA was found.

Predicted Domain #2

Region A:
Residues: [151-238]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VKEEWEPPQE RPYVPGENLQ KWLTDDKARD QLVIRFGHDT EVYWNDARQK KPEPVHKRSY  60
   61 WTESYVQWSP IGTYLVTLHK QGAAVWGG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.804	b.114.1	N-utilization substance G protein NusG, insert domain

Predicted Domain #3

Region A:
Residues: [239-588]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ADTFTRLMRY QHSMVKLVDF SPGEKYLVTY HSQEPSNPRD ASKVEIKVFD VRTGRMMRDF  60
   61 KGSADEFSIG GPGGVAGASW PVFRWAGGKD DKYFAKLSKN TISVYETETF SLIDKKSMKV 120
  121 DNVVDICWSP TDSILSLFVP EQGGGNQPAK VALVQIPSKV ELRQKNLFSV SDCKMYWQSS 180
  181 GEYLAVKVDR YTKTKKSTYS GFELFRIKER DIPIEVLELD NKNDKIIAFA WEPKGHRFAV 240
  241 IHGDQPRPDV SFYSMKTAQN TGRVSKLATL KAKQANALFW SPTGKYIILA GLKGFNGQLE 300
  301 FFNVDELETM ATAEHFMATD IEWDPTGRYV ATSVTTVHEM ENGFTIWSFN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.39794
Match:	1vyhC
Description:	PAF-AH Holoenzyme: Lis1/Alfa2
Matching Structure (courtesy of the PDB):

Predicted Domain #4

Region A:
Residues: [589-632]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNMVYRILKD HFFQLAWRPR PASFLTAEKE EEIAKNLRNY SKRY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [633-714]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EAEDQDVSLL LSEQDREKRR ALNEEWQKWV MQWKSLHEEE KLVRQNLRDG EVSDVEEDEY  60
   61 EAKEVEFEDL IDVTEEIVQE LM

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.912	a.118.1	ARM repeat

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits