| Protein: | gi|49258498 |
| Organism: | Homo sapiens |
| Length: | 237 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49258498.
| Description | E-value | Query Range |
Subject Range |
|
|
238.0 | [0..1] | [236..361] |
|
|
236.0 | [0..1] | [236..229] |
|
|
233.0 | [0..1] | [236..212] |
|
|
233.0 | [0..1] | [236..227] |
|
|
233.0 | [0..1] | [236..295] |
|
Region A: Residues: [1-237] |
1 11 21 31 41 51
| | | | | |
1 SSYELASLPS INALLQAEVL SRQITSPVSG INGDIRAKKI ASIADVCESM KEQLLVLVEW 60
61 AKYIPAFCEL PLDDQVALLR AHAGEHLLLG ATKRSMVFKD VLLLGNDYIV PRHCPELAEM 120
121 SRVSIRILDE LVLPFQELQI DDNEYAYLKA IIFFDPDAKG LSDPGKIKRL RSQVQVSLED 180
181 YINDRQYDSR GRFGELLLLL PTLQSITWQM IEQIQFIKLF GMAKIDNLLQ EMLLGGS
|
| Detection Method: |  |
| Confidence: | 47.39794 |
| Match: | 1pzlA |
| Description: | Crystal structure of HNF4a LBD in complex with the ligand and the coactivator SRC-1 peptide |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.96722324965091 | bayes_pls_golite062009 |
| DNA binding | 3.25939553877631 | bayes_pls_golite062009 |
| nucleic acid binding | 3.16396885393239 | bayes_pls_golite062009 |
| transcription activator activity | 2.6892852470567 | bayes_pls_golite062009 |
| transcription factor activity | 2.56099230851339 | bayes_pls_golite062009 |
| binding | 2.51356324019445 | bayes_pls_golite062009 |
| protein binding | 2.49676963514373 | bayes_pls_golite062009 |
| ligand-dependent nuclear receptor activity | 2.20144353900307 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.1684625121246 | bayes_pls_golite062009 |
| signal transducer activity | 1.57315744720763 | bayes_pls_golite062009 |
| molecular transducer activity | 1.57315744720763 | bayes_pls_golite062009 |
| receptor activity | 1.28597420456904 | bayes_pls_golite062009 |
| transcription factor binding | 0.78455053961808 | bayes_pls_golite062009 |
| steroid hormone receptor activity | 0.71366308307673 | bayes_pls_golite062009 |
| transcription repressor activity | 0.49585672359082 | bayes_pls_golite062009 |
| catalytic activity | 0.477341996033689 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.36233153809872 | bayes_pls_golite062009 |
| retinoic acid receptor activity | 0.26050147400703 | bayes_pls_golite062009 |
