| Protein: | gi|220942642 |
| Organism: | synthetic construct |
| Length: | 414 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220942642.
| Description | E-value | Query Range |
Subject Range |
|
|
259.0 | [0..1] | [414..1] |
|
Region A: Residues: [1-414] |
1 11 21 31 41 51
| | | | | |
1 MIITIKNLQQ QTFTIEFAPE KTVLELKKKI FEERGPEYVA EKQKLIYAGV ILTDDRTVGS 60
61 YNVDEKKFIV VMLTRDSSSS NRNQLSVKES NKLTSTDDSK QSMPCEEANH TNSPSSTNTE 120
121 DSVLSRETRP LSSDELIGEL AQASLQSRAE SNLLMGDEYN QTVLSMVEMG YPREQVERAM 180
181 AASYNNPERA VEYLINGIPA EEGTFYNRLN ESTNPSLIPS GPQPASATSA ERSTESNSDP 240
241 FEFLRSQPQF LQMRSLIYQN PHLLHAVLQQ IGQTNPALLQ LISENQDAFL NMLNQPIDRE 300
301 SESGATVPPV SNARIPSTLD NVDLFSPDLE VATSAQRSAA GTSAAHQSGS AADNEDLEQP 360
361 LGVSTIRLNR QDKDAIERLK ALGFPEALVL QAYFACEKNE EQAANFLLSS SFDD
|
| Detection Method: |  |
| Confidence: | 47.69897 |
| Match: | 1oqyA |
| Description: | Structure of the DNA repair protein hHR23a |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| damaged DNA binding | 4.47463096529128 | bayes_pls_golite062009 |
| peptidase activity | 4.11397638448668 | bayes_pls_golite062009 |
| peptidase activity, acting on L-amino acid peptides | 3.93085931991298 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 3.71144418714309 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 3.30801071565148 | bayes_pls_golite062009 |
| binding | 2.786655943372 | bayes_pls_golite062009 |
| hydrolase activity | 2.77871378503369 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 2.72499875710239 | bayes_pls_golite062009 |
| protein tag | 2.15059229834935 | bayes_pls_golite062009 |
| ligase activity, forming carbon-nitrogen bonds | 2.00465244189638 | bayes_pls_golite062009 |
| protein binding | 1.86841453215444 | bayes_pls_golite062009 |
| transcription regulator activity | 1.42747465816672 | bayes_pls_golite062009 |
| nucleic acid binding | 1.32707653701567 | bayes_pls_golite062009 |
| DNA binding | 1.22622447288034 | bayes_pls_golite062009 |
| SUMO ligase activity | 0.80391127659342 | bayes_pls_golite062009 |
| small conjugating protein-specific protease activity | 0.59805675560068 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.570143717979967 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 0.536856055841234 | bayes_pls_golite062009 |
| kinase activity | 0.506057697290914 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.410719674374641 | bayes_pls_golite062009 |
| ubiquitin-specific protease activity | 0.387487703339719 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.366426020658587 | bayes_pls_golite062009 |
| protein kinase activity | 0.325253662829604 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.249928925871521 | bayes_pls_golite062009 |
| transferase activity | 0.236208643697075 | bayes_pls_golite062009 |
| polyubiquitin binding | 0.126322128629172 | bayes_pls_golite062009 |
