| Protein: | gi|220944748 |
| Organism: | synthetic construct |
| Length: | 503 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220944748.
| Description | E-value | Query Range |
Subject Range |
|
|
701.0 | [0..1] | [503..1] |
|
Region A: Residues: [1-231] |
1 11 21 31 41 51
| | | | | |
1 METLLEQQRR LHEERERLVK LMVDEHATKK PGEKERIHSE HRLKYLMELH HNSTSQLRDL 60
61 YEDKDNERKA EIAALSGPNE FNEFYARLKQ IKQFYKSHPA EVSVPLSVEF DEMIRVYNNP 120
121 DDMSALVEFT DEEGGGRYLD LNECYELYLN LRSVEKLDYI TYLMSFDHVF DIPRERKNRE 180
181 YRIYIETLND YLHHFILRIQ PLLDLEGELL KVELDFQRQW LMGTFPGFSI K
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [232-306] |
1 11 21 31 41 51
| | | | | |
1 ETESALANTG AHLDLSAFSS WEELASLGLD RLKSALVALG LKCGGTLEER AQRLFSTKGK 60
61 STLDPALMAK KPSAK
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [307-372] |
1 11 21 31 41 51
| | | | | |
1 TASAQSREHE RHKEIAQLEA LLYKYADLLS EQRAATKENV QRKQARTGGE RDDSDVEASE 60
61 SDNEDD
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [373-503] |
1 11 21 31 41 51
| | | | | |
1 PDADDVPYNP KNLPLGWDGK PIPYWLYKLH GLNISYNCEI CGNFTYKGPK AFQRHFAEWR 60
61 HAHGMRCLGI PNTAHFANVT QIEDAITLWE KLKSQKQSER WVADQEEEFE DSLGNVVNRK 120
121 TFEDLKRQGL L
|
| Detection Method: | |
| Confidence: | 1.05 |
| Match: | 1zr9A |
| Description: | Solution Structure of a Human C2H2-type Zinc Finger Protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.37529385176635 | bayes_pls_golite062009 |
| DNA binding | 3.3049326844117 | bayes_pls_golite062009 |
| nucleic acid binding | 3.24981360535232 | bayes_pls_golite062009 |
| snRNA binding | 3.16782731106334 | bayes_pls_golite062009 |
| RNA binding | 3.11293528368816 | bayes_pls_golite062009 |
| binding | 2.99742524370422 | bayes_pls_golite062009 |
| U1 snRNA binding | 2.86343975521155 | bayes_pls_golite062009 |
| transcription factor activity | 2.44389510173662 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.57041104288348 | bayes_pls_golite062009 |
| mRNA binding | 1.28525296322454 | bayes_pls_golite062009 |
| transcription activator activity | 1.20323819132961 | bayes_pls_golite062009 |
| protein binding | 0.952480850696098 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.732558534458316 | bayes_pls_golite062009 |
| transcription repressor activity | 0.686318575498149 | bayes_pls_golite062009 |
| chromatin binding | 0.626365497850853 | bayes_pls_golite062009 |
| transcription factor binding | 0.515821187939278 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.380243728411498 | bayes_pls_golite062009 |
| catalytic activity | 0.263007611601737 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.200483461579207 | bayes_pls_golite062009 |
| tubulin binding | 0.151955152284472 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.113925660147477 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.0855506955761403 | bayes_pls_golite062009 |
| microtubule binding | 0.05082413668213 | bayes_pls_golite062009 |
