| Protein: | gi|157169143 |
| Organism: | Ruditapes philippinarum |
| Length: | 136 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|157169143.
| Description | E-value | Query Range |
Subject Range |
|
|
2.0E-65 | [1..136] | [45..180] |
|
|
4.0E-63 | [1..136] | [207..342] |
|
|
1.0E-62 | [1..136] | [621..756] |
|
|
2.0E-61 | [1..136] | [1..136] |
|
|
9.0E-61 | [1..136] | [46..181] |
|
Region A: Residues: [1-136] |
1 11 21 31 41 51
| | | | | |
1 MARTKQTARK STGGKAPRKQ LATKAARKSA PATGGVKKPH RYRPGTVALR EIRRYQKSTE 60
61 LLIRKLPFQR LVREIAQDFK TDLRFQSSAV MALQEASEAY LVGLFEDTNL CAIHAKRVTI 120
121 MPKDIQLARR IRGERA
|
| Detection Method: |  |
| Confidence: | 59.522879 |
| Match: | 1u35A |
| Description: | Crystal structure of the nucleosome core particle containing the histone domain of macroH2A |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| general RNA polymerase II transcription factor activity | 6.43582244485566 | bayes_pls_golite062009 |
| DNA binding | 4.49118409263799 | bayes_pls_golite062009 |
| nucleic acid binding | 4.35201412176948 | bayes_pls_golite062009 |
| transcription regulator activity | 4.08606081850613 | bayes_pls_golite062009 |
| binding | 3.27510691458843 | bayes_pls_golite062009 |
| centromeric DNA binding | 2.60445660474495 | bayes_pls_golite062009 |
| transcription factor activity | 2.51581622888695 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.38228606466152 | bayes_pls_golite062009 |
| transcription repressor activity | 2.3574713307436 | bayes_pls_golite062009 |
| transcription initiation factor activity | 1.57176056919918 | bayes_pls_golite062009 |
| lysine N-acetyltransferase activity | 1.56792915081508 | bayes_pls_golite062009 |
| histone acetyltransferase activity | 1.56792915081508 | bayes_pls_golite062009 |
| transcription corepressor activity | 1.30859203490073 | bayes_pls_golite062009 |
| transcription activator activity | 1.25487495162413 | bayes_pls_golite062009 |
| transcription factor binding | 1.15204005455906 | bayes_pls_golite062009 |
| transcription coactivator activity | 1.1297723528047 | bayes_pls_golite062009 |
| protein binding | 1.07873333188144 | bayes_pls_golite062009 |
| transcription cofactor activity | 1.01502031330902 | bayes_pls_golite062009 |
| histone binding | 0.218942897869955 | bayes_pls_golite062009 |
| N-acetyltransferase activity | 0.093732143600004 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.0852726470007639 | bayes_pls_golite062009 |
