YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|33357732
Organism: Homo sapiens
Length: 252 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33357732.

Description E-value Query
Range
Subject
Range
gi|18044959 - gi|18044959|gb|AAH20240.1| IGHM protein [Homo sapiens]
204.0 [0..2] [242..19]

Back

Predicted Domain #1
Region A:
Residues: [1-252]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDGGITQSP KYLFRKEGQN VTLSCEQNLN HDAMYWYRQD PGQGLRLIYY SQIVNDFQKG  60
   61 DIAEGYSVSR EKKESFPLTV TSAQKNPTAF YLCASSSRSS YEQYFGPGTR LTVTEDLKNV 120
  121 FPPEVAVFEP SEAEISHTQK ATLVCLATGF YPDHVELSWW VNGKEVHSGV STDPQPLKEQ 180
  181 PALNDSRYSL SSRLRVSATF WQNPRNHFRC QVQFYGLSEN DEWTQDRAKP VTQIVSAEAW 240
  241 GRADQDRGGG CD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 52.221849
Match: 1ogaE
Description: T-cell antigen receptor
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
antigen binding 3.72597633672466 bayes_pls_golite062009
binding 1.98262954718581 bayes_pls_golite062009
receptor activity 1.9202781107236 bayes_pls_golite062009
peptide antigen binding 1.66960790017756 bayes_pls_golite062009
transmembrane receptor activity 1.50492718932189 bayes_pls_golite062009
signal transducer activity 1.11174153927545 bayes_pls_golite062009
molecular transducer activity 1.11174153927545 bayes_pls_golite062009
protein binding 0.925738463571838 bayes_pls_golite062009
receptor binding 0.601327836278943 bayes_pls_golite062009
immunoglobulin binding 0.48272957113121 bayes_pls_golite062009
MHC class II receptor activity 0.251167772391909 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle