Protein: | gi|18412930, gi|... |
Organism: | Arabidopsis thaliana |
Length: | 388 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18412930, gi|....
Description | E-value | Query Range |
Subject Range |
|
536.0 | [0..1] | [370..162] |
Region A: Residues: [1-135] |
1 11 21 31 41 51 | | | | | | 1 MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN 60 61 IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID NVKAKIQDKE GIPPDQQRLI 120 121 FAGKQLEDGR TLADY |
Detection Method: | |
Confidence: | 28.69897 |
Match: | 1yx5B |
Description: | Solution Structure of S5a UIM-1/Ubiquitin Complex |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
small conjugating protein ligase activity | 7.96815122865454 | bayes_pls_golite062009 |
ubiquitin-protein ligase activity | 7.5865326390755 | bayes_pls_golite062009 |
acid-amino acid ligase activity | 6.96506647680367 | bayes_pls_golite062009 |
ligase activity, forming carbon-nitrogen bonds | 5.87890364671564 | bayes_pls_golite062009 |
structural constituent of ribosome | 5.80275625219016 | bayes_pls_golite062009 |
structural molecule activity | 5.37716040292459 | bayes_pls_golite062009 |
ligase activity | 2.98370000660434 | bayes_pls_golite062009 |
protein binding | 2.9188688008729 | bayes_pls_golite062009 |
binding | 2.786655943372 | bayes_pls_golite062009 |
transcription regulator activity | 2.21955949922709 | bayes_pls_golite062009 |
tubulin binding | 2.21127283188349 | bayes_pls_golite062009 |
cytoskeletal protein binding | 2.20811136250556 | bayes_pls_golite062009 |
protein tag | 2.15059229834935 | bayes_pls_golite062009 |
nucleic acid binding | 1.9984951714209 | bayes_pls_golite062009 |
microtubule binding | 1.92602521631666 | bayes_pls_golite062009 |
DNA binding | 1.86539227646379 | bayes_pls_golite062009 |
receptor binding | 1.09091623056284 | bayes_pls_golite062009 |
general RNA polymerase II transcription factor activity | 1.06193722939839 | bayes_pls_golite062009 |
SUMO ligase activity | 0.80391127659342 | bayes_pls_golite062009 |
RNA polymerase II transcription factor activity | 0.62324312069889 | bayes_pls_golite062009 |
hydrolase activity | 0.614233748923048 | bayes_pls_golite062009 |
phosphotransferase activity, alcohol group as acceptor | 0.536856055841234 | bayes_pls_golite062009 |
kinase activity | 0.506057697290914 | bayes_pls_golite062009 |
transferase activity, transferring phosphorus-containing groups | 0.410719674374641 | bayes_pls_golite062009 |
RNA binding | 0.359926300264681 | bayes_pls_golite062009 |
protein kinase activity | 0.325253662829604 | bayes_pls_golite062009 |
peptidase inhibitor activity | 0.27796076785312 | bayes_pls_golite062009 |
enzyme binding | 0.240262781026149 | bayes_pls_golite062009 |
endopeptidase inhibitor activity | 0.189489510504993 | bayes_pls_golite062009 |
structure-specific DNA binding | 0.0788219117963673 | bayes_pls_golite062009 |
Region A: Residues: [136-226] |
1 11 21 31 41 51 | | | | | | 1 NIQKESTLHL VLRLRGGMQI FVKTLTGKTI TLEVESSDTI DNVKAKIQDK EGIPPDQQRL 60 61 IFAGKQLEDG RTLADYNIQK ESTLHLVLRL R |
Detection Method: | |
Confidence: | 11.69897 |
Match: | 1we7A |
Description: | Solution structure of Ubiquitin-like domain in SF3a120 |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
small conjugating protein ligase activity | 7.96815122865454 | bayes_pls_golite062009 |
ubiquitin-protein ligase activity | 7.5865326390755 | bayes_pls_golite062009 |
acid-amino acid ligase activity | 6.96506647680367 | bayes_pls_golite062009 |
ligase activity, forming carbon-nitrogen bonds | 5.87890364671564 | bayes_pls_golite062009 |
structural constituent of ribosome | 5.80275625219016 | bayes_pls_golite062009 |
structural molecule activity | 5.37716040292459 | bayes_pls_golite062009 |
ligase activity | 2.98370000660434 | bayes_pls_golite062009 |
protein binding | 2.9188688008729 | bayes_pls_golite062009 |
binding | 2.786655943372 | bayes_pls_golite062009 |
transcription regulator activity | 2.21955949922709 | bayes_pls_golite062009 |
tubulin binding | 2.21127283188349 | bayes_pls_golite062009 |
cytoskeletal protein binding | 2.20811136250556 | bayes_pls_golite062009 |
protein tag | 2.15059229834935 | bayes_pls_golite062009 |
nucleic acid binding | 1.9984951714209 | bayes_pls_golite062009 |
microtubule binding | 1.92602521631666 | bayes_pls_golite062009 |
DNA binding | 1.86539227646379 | bayes_pls_golite062009 |
receptor binding | 1.09091623056284 | bayes_pls_golite062009 |
general RNA polymerase II transcription factor activity | 1.06193722939839 | bayes_pls_golite062009 |
SUMO ligase activity | 0.80391127659342 | bayes_pls_golite062009 |
RNA polymerase II transcription factor activity | 0.62324312069889 | bayes_pls_golite062009 |
hydrolase activity | 0.614233748923048 | bayes_pls_golite062009 |
phosphotransferase activity, alcohol group as acceptor | 0.536856055841234 | bayes_pls_golite062009 |
kinase activity | 0.506057697290914 | bayes_pls_golite062009 |
transferase activity, transferring phosphorus-containing groups | 0.410719674374641 | bayes_pls_golite062009 |
RNA binding | 0.359926300264681 | bayes_pls_golite062009 |
protein kinase activity | 0.325253662829604 | bayes_pls_golite062009 |
peptidase inhibitor activity | 0.27796076785312 | bayes_pls_golite062009 |
enzyme binding | 0.240262781026149 | bayes_pls_golite062009 |
endopeptidase inhibitor activity | 0.189489510504993 | bayes_pls_golite062009 |
structure-specific DNA binding | 0.0788219117963673 | bayes_pls_golite062009 |
Region A: Residues: [227-312] |
1 11 21 31 41 51 | | | | | | 1 GGMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGIPP DQQRLIFAGK QLEDGRTLAD 60 61 YNIQKESTLH LVLRLRGGMQ IFVKTL |
Detection Method: | |
Confidence: | 11.0 |
Match: | 2hj8A |
Description: | No description for 2hj8A was found. |
Term | Confidence | Notes |
small conjugating protein ligase activity | 7.96815122865454 | bayes_pls_golite062009 |
ubiquitin-protein ligase activity | 7.5865326390755 | bayes_pls_golite062009 |
acid-amino acid ligase activity | 6.96506647680367 | bayes_pls_golite062009 |
ligase activity, forming carbon-nitrogen bonds | 5.87890364671564 | bayes_pls_golite062009 |
structural constituent of ribosome | 5.80275625219016 | bayes_pls_golite062009 |
structural molecule activity | 5.37716040292459 | bayes_pls_golite062009 |
ligase activity | 2.98370000660434 | bayes_pls_golite062009 |
protein binding | 2.9188688008729 | bayes_pls_golite062009 |
binding | 2.786655943372 | bayes_pls_golite062009 |
transcription regulator activity | 2.21955949922709 | bayes_pls_golite062009 |
tubulin binding | 2.21127283188349 | bayes_pls_golite062009 |
cytoskeletal protein binding | 2.20811136250556 | bayes_pls_golite062009 |
protein tag | 2.15059229834935 | bayes_pls_golite062009 |
nucleic acid binding | 1.9984951714209 | bayes_pls_golite062009 |
microtubule binding | 1.92602521631666 | bayes_pls_golite062009 |
DNA binding | 1.86539227646379 | bayes_pls_golite062009 |
receptor binding | 1.09091623056284 | bayes_pls_golite062009 |
general RNA polymerase II transcription factor activity | 1.06193722939839 | bayes_pls_golite062009 |
SUMO ligase activity | 0.80391127659342 | bayes_pls_golite062009 |
RNA polymerase II transcription factor activity | 0.62324312069889 | bayes_pls_golite062009 |
hydrolase activity | 0.614233748923048 | bayes_pls_golite062009 |
phosphotransferase activity, alcohol group as acceptor | 0.536856055841234 | bayes_pls_golite062009 |
kinase activity | 0.506057697290914 | bayes_pls_golite062009 |
transferase activity, transferring phosphorus-containing groups | 0.410719674374641 | bayes_pls_golite062009 |
RNA binding | 0.359926300264681 | bayes_pls_golite062009 |
protein kinase activity | 0.325253662829604 | bayes_pls_golite062009 |
peptidase inhibitor activity | 0.27796076785312 | bayes_pls_golite062009 |
enzyme binding | 0.240262781026149 | bayes_pls_golite062009 |
endopeptidase inhibitor activity | 0.189489510504993 | bayes_pls_golite062009 |
structure-specific DNA binding | 0.0788219117963673 | bayes_pls_golite062009 |
Region A: Residues: [313-388] |
1 11 21 31 41 51 | | | | | | 1 TGKTITLEVE SSDTIDNVKA KIQDKEVFLR TSSVSSSLES SLRMDVLWPT TTSRRSLLFT 60 61 WSCVFVVVSK SRLCYA |
Detection Method: | |
Confidence: | 4.03 |
Match: | 1uelA |
Description: | Solution structure of ubiquitin-like domain of hHR23B complexed with ubiquitin-interacting motif of proteasome subunit S5a |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
small conjugating protein ligase activity | 7.77976521481104 | bayes_pls_golite062009 |
ubiquitin-protein ligase activity | 7.45825282569124 | bayes_pls_golite062009 |
acid-amino acid ligase activity | 6.82424077726436 | bayes_pls_golite062009 |
ligase activity, forming carbon-nitrogen bonds | 5.78164148882937 | bayes_pls_golite062009 |
structural constituent of ribosome | 5.77326793355348 | bayes_pls_golite062009 |
structural molecule activity | 5.36311620867914 | bayes_pls_golite062009 |
ligase activity | 2.93949076291021 | bayes_pls_golite062009 |
protein binding | 2.78014377544701 | bayes_pls_golite062009 |
binding | 2.70872150536621 | bayes_pls_golite062009 |
transcription regulator activity | 2.23822335492051 | bayes_pls_golite062009 |
cytoskeletal protein binding | 2.11984570584255 | bayes_pls_golite062009 |
tubulin binding | 2.03607606145909 | bayes_pls_golite062009 |
nucleic acid binding | 2.02209816078273 | bayes_pls_golite062009 |
DNA binding | 1.8833926783115 | bayes_pls_golite062009 |
microtubule binding | 1.75926256048235 | bayes_pls_golite062009 |
protein tag | 1.64936739586738 | bayes_pls_golite062009 |
receptor binding | 1.07983643886476 | bayes_pls_golite062009 |
general RNA polymerase II transcription factor activity | 1.04462787665591 | bayes_pls_golite062009 |
hydrolase activity | 0.633589926944629 | bayes_pls_golite062009 |
RNA polymerase II transcription factor activity | 0.624731467637361 | bayes_pls_golite062009 |
phosphotransferase activity, alcohol group as acceptor | 0.549761413791307 | bayes_pls_golite062009 |
kinase activity | 0.520011006272513 | bayes_pls_golite062009 |
SUMO ligase activity | 0.469920108401949 | bayes_pls_golite062009 |
transferase activity, transferring phosphorus-containing groups | 0.426082194130922 | bayes_pls_golite062009 |
RNA binding | 0.3655923364304 | bayes_pls_golite062009 |
protein kinase activity | 0.336252604607827 | bayes_pls_golite062009 |
peptidase inhibitor activity | 0.270602640718893 | bayes_pls_golite062009 |
endopeptidase inhibitor activity | 0.181054590240182 | bayes_pls_golite062009 |
enzyme binding | 0.147520546067615 | bayes_pls_golite062009 |
structure-specific DNA binding | 0.0623044995795676 | bayes_pls_golite062009 |