YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|109946597, gi...
Organism:	Arabidopsis thaliana
Length:	425 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|109946597, gi....

Description	E-value	Query Range	Subject Range
gi\|238480047, gi... - gi\|42572637\|ref\|NP_974414.1\| 5'-3' exonuclease/ DNA binding / catalytic/ nuclease [Arabidopsis thali...	353.0	[0..1]	[345..24]
gi\|108706960 - gi\|108706960\|gb\|ABF94755.1\| 5'-3' exonuclease, N-terminal resolvase-like domain containing protein, ...	311.0	[0..26]	[423..5]
gi\|56421265, gi\|... - gi\|56421265\|ref\|YP_148583.1\| DNA polymerase I [Geobacillus kaustophilus HTA426], gi\|56381107\|dbj\|BAD...	295.0	[0..90]	[416..1]
gi\|38146965 - gi\|38146965\|gb\|AAR11867.1\| DNA polymerase I [Bacillus caldolyticus]	295.0	[0..90]	[416..1]
DPO1_BACCA - DNA polymerase I OS=Bacillus caldotenax GN=polA PE=1 SV=1	294.0	[0..93]	[416..2]
gi\|15615715, gi\|... - gi\|15615715\|ref\|NP_244019.1\| DNA polymerase I [Bacillus halodurans C-125], gi\|10175775\|dbj\|BAB06872.... gi\|25288528 - pir\|\|A84044 DNA polymerase I polA [imported] - Bacillus halodurans (strain C-125)	294.0	[0..94]	[418..2]
gi\|53757056, gi\|... - gi\|53803295\|ref\|YP_114980.1\| DNA polymerase I [Methylococcus capsulatus str. Bath], gi\|53757056\|gb\|A...	293.0	[0..88]	[408..2]
gi\|1205984 - gi\|1205984\|gb\|AAB52611.1\| DNA polymerase I gi\|196249912, gi... - gi\|196249912\|ref\|ZP_03148607.1\| DNA polymerase I [Geobacillus sp. G11MC16], gi\|196210426\|gb\|EDY05190...	293.0	[0..93]	[423..2]

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Predicted Domain #1

Region A:
Residues: [1-93]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLHLYHHSR FLWRNLCFPR SVGNLCNRNC SLISPSLARS AKYYCSSVAV SEFSNEAASG  60
   61 STLTSISEDV TPQSIKYPFK SEERVASTAA SSN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [94-425]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GRVMLIDGTS IIYRAYYKLL ARLNHGHLAH ADGNADWVLT IFSSLSLLID VLKFLPSHVA  60
   61 VVFDHDGVPY GTTSNSSTGY RSAKGMNFRH TLYPAYKSNR PPTPDTIVQG LQYLKASIKA 120
  121 MSIKVIEVPG VEADDVIGTL AMRSISAGFK VRVVSPDKDF FQILSPSLRL LRLTPRGSEM 180
  181 ASFGMEDFAK KFGNLEPAQF VDIIALAGDK SDNIPGVDGI GNVHAVELIS RFGTLENLLQ 240
  241 SVDEIKEGKI KESLIASADQ AILSKKLALL RSDLPDYIVP FDTKDLTFKK PEDNGEKLSS 300
  301 LLIAIADYAE GFSADPVIRR AFRLWEKLEA VP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	70.221849
Match:	1bgxT
Description:	5' to 3' exonuclease domain of DNA polymerase Taq; Exonuclease domain of prokaryotic DNA polymerase; DNA polymerase I (Klenow fragment)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits