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Protein Overview: gi|109946597, gi...

General Information:
Name(s) found: gi|42565846 [NCBI NR]
gi|145362483 [NCBI NR]
gi|109946597 [NCBI NR]
Description(s) found:
Found 11 descriptions.
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  • gi|42565846|ref|NP_190773.2| 5'-3' exonuclease family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|145362483|ref|NP_974414.2| 5'-3' exonuclease family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|109946597|gb|ABG48477.1| At3g52050 [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 425 amino acids

    Gene Ontology:
    Cellular Component: mitochondrion [IEA]
    Biological Process: NONE FOUND
    Molecular Function: 5'-3' exonuclease activity [IEA]
    DNA binding [IEA]
    catalytic activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLHLYHHSR FLWRNLCFPR SVGNLCNRNC SLISPSLARS AKYYCSSVAV SEFSNEAASG  60
   61 STLTSISEDV TPQSIKYPFK SEERVASTAA SSNGRVMLID GTSIIYRAYY KLLARLNHGH 120
  121 LAHADGNADW VLTIFSSLSL LIDVLKFLPS HVAVVFDHDG VPYGTTSNSS TGYRSAKGMN 180
  181 FRHTLYPAYK SNRPPTPDTI VQGLQYLKAS IKAMSIKVIE VPGVEADDVI GTLAMRSISA 240
  241 GFKVRVVSPD KDFFQILSPS LRLLRLTPRG SEMASFGMED FAKKFGNLEP AQFVDIIALA 300
  301 GDKSDNIPGV DGIGNVHAVE LISRFGTLEN LLQSVDEIKE GKIKESLIAS ADQAILSKKL 360
  361 ALLRSDLPDY IVPFDTKDLT FKKPEDNGEK LSSLLIAIAD YAEGFSADPV IRRAFRLWEK 420
  421 LEAVP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..93] deduced N/A No confident structure predictions are available.
    2 View Details [94..425] PSI-BLAST 70.221849 5' to 3' exonuclease domain of DNA polymerase Taq; Exonuclease domain of prokaryotic DNA polymerase; DNA polymerase I (Klenow fragment)


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle