YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|5542088, gi\|5...
Organism:	Escherichia coli
Length:	119 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|5542088, gi|5....

Description	E-value	Query Range	Subject Range
gi\|78701429, gi\|... - gi\|78701429\|ref\|ZP_00865879.1\| Protein splicing (intein) site [Alkalilimnicola ehrlichei MLHE-1], gi...	182.0	[0..1]	[119..1]
gi\|81243686, gi\|... - gi\|82779538\|ref\|YP_405887.1\| replicative DNA helicase [Shigella dysenteriae Sd197], gi\|81243686\|gb\|A...	176.0	[0..2]	[119..12]
gi\|85676804, gi\|... - gi\|89110773\|ref\|AP_004553.1\| replicative DNA helicase [Escherichia coli str. K-12 substr. W3110], gi... gi\|169891344, gi... - gi\|170083509\|ref\|YP_001732829.1\| replicative DNA helicase [Escherichia coli str. K-12 substr. DH10B]... gi\|170021950, gi... - gi\|170021950\|ref\|YP_001726904.1\| replicative DNA helicase [Escherichia coli ATCC 8739], gi\|169756878... gi\|74314546, gi\|... - gi\|74314546\|ref\|YP_312965.1\| replicative DNA helicase [Shigella sonnei Ss046], gi\|73858023\|gb\|AAZ907... gi\|209914795, gi... - gi\|209921536\|ref\|YP_002295620.1\| replicative DNA helicase [Escherichia coli SE11], gi\|209914795\|dbj\|... gi\|81247790, gi\|... - gi\|82546379\|ref\|YP_410326.1\| replicative DNA helicase [Shigella boydii Sb227], gi\|81247790\|gb\|ABB684... gi\|170520838, gi... - gi\|170683120\|ref\|YP_001746441.1\| replicative DNA helicase [Escherichia coli SMS-3-5], gi\|170520838\|g... gi\|218363378, gi... - gi\|218556609\|ref\|YP_002389523.1\| replicative DNA helicase [Escherichia coli IAI1], gi\|218363378\|emb\|... gi\|110644387, gi... - gi\|110644387\|ref\|YP_672117.1\| replicative DNA helicase [Escherichia coli 536], gi\|110345979\|gb\|ABG72... gi\|215267459, gi... - gi\|215489387\|ref\|YP_002331818.1\| replicative DNA helicase [Escherichia coli O127:H6 str. E2348/69], ... gi\|218354492, gi... - gi\|218697760\|ref\|YP_002405427.1\| replicative DNA helicase [Escherichia coli 55989], gi\|218354492\|emb... gi\|218429899, gi... - gi\|218692335\|ref\|YP_002400547.1\| replicative DNA helicase [Escherichia coli ED1a], gi\|218429899\|emb\|... gi\|194415228, gi... - gi\|75211980\|ref\|ZP_00712035.1\| COG0305: Replicative DNA helicase [Escherichia coli B171], gi\|1944268... gi\|191168801, gi... - gi\|75227995\|ref\|ZP_00714686.1\| COG0305: Replicative DNA helicase [Escherichia coli B7A], gi\|19116880... gi\|187429016, gi... - gi\|75179601\|ref\|ZP_00699605.1\| COG0305: Replicative DNA helicase [Shigella boydii BS512], gi\|1877320... gi\|157156324, gi... - gi\|75188776\|ref\|ZP_00702043.1\| COG0305: Replicative DNA helicase [Escherichia coli E24377A], gi\|1571... DNAB_SHIFL - Replicative DNA helicase OS=Shigella flexneri GN=dnaB PE=3 SV=1 gi\|192931383, gi... - gi\|75258970\|ref\|ZP_00730338.1\| COG0305: Replicative DNA helicase [Escherichia coli E22], gi\|19306312... gi\|24054664, gi\|... - gi\|24115358\|ref\|NP_709868.1\| replicative DNA helicase [Shigella flexneri 2a str. 301], gi\|24054664\|g... gi\|75514811, gi\|... - gi\|75514811\|ref\|ZP_00737040.1\| COG0305: Replicative DNA helicase [Escherichia coli 53638], gi\|188495... gi\|30064641, gi\|... - gi\|30064641\|ref\|NP_838812.1\| replicative DNA helicase [Shigella flexneri 2a str. 2457T], gi\|30042900... gi\|192958908, gi... - gi\|75238588\|ref\|ZP_00722577.1\| COG0305: Replicative DNA helicase [Escherichia coli E110019], gi\|1930... EG10236 - replicative DNA helicase / Replicative DNA helicase; DNA-dependent ATPase involved in DNA synthesis;... gi\|191171963, gi... - gi\|75241080\|ref\|ZP_00724954.1\| COG0305: Replicative DNA helicase [Escherichia coli F11], gi\|19117196... gi\|238863449, gi... - gi\|238903161\|ref\|YP_002928957.1\| replicative DNA helicase [Escherichia coli BW2952], gi\|238863449\|gb... gi\|251787307, gi... - gi\|251787307\|ref\|YP_003001611.1\| hypothetical protein B21_03884 [Escherichia coli BL21], gi\|24237958... gi\|253326364, gi... - gi\|254290738\|ref\|YP_003056486.1\| replicative DNA helicase [Escherichia coli BL21(DE3)], gi\|253980045... gi\|254037049, gi... - gi\|254037049\|ref\|ZP_04871126.1\| replicative DNA helicase [Escherichia sp. 1_1_43], gi\|226840155\|gb\|E... gi\|254163988, gi... - gi\|254163988\|ref\|YP_003047096.1\| replicative DNA helicase [Escherichia coli B str. REL606], gi\|25397... gi\|194437201, gi... - gi\|83587175\|ref\|ZP_00925804.1\| COG0305: Replicative DNA helicase [Escherichia coli 101-1], gi\|194437... EG10236 - replicative DNA helicase / Replicative DNA helicase; DNA-dependent ATPase involved in DNA synthesis;... gi\|195183271 - gi\|195183271\|dbj\|BAG66812.1\| replicative DNA helicase [Escherichia coli O111:H-] DNAB_ECOLI - Replicative DNA helicase (EC 3.6.1.-) - Escherichia coli gi\|124527691, gi... - gi\|124527691\|ref\|ZP_01699126.1\| replicative DNA helicase [Escherichia coli B], gi\|124501134\|gb\|EAY48...	176.0	[0..2]	[119..12]
gi\|157163521, gi... - gi\|75197910\|ref\|ZP_00707980.1\| COG0305: Replicative DNA helicase [Escherichia coli HS], gi\|157163521...	176.0	[0..2]	[119..12]
gi\|189374952, gi... - gi\|189374952\|gb\|EDU93368.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC869], gi\|16878... gi\|15804644, gi\|... - gi\|15804644\|ref\|NP_290685.1\| replicative DNA helicase [Escherichia coli O157:H7 EDL933], gi\|12519003... gi\|168798288, gi... - gi\|189379073\|gb\|EDU97489.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC508], gi\|16879... gi\|15834288, gi\|... - gi\|15834288\|ref\|NP_313061.1\| replicative DNA helicase [Escherichia coli O157:H7 str. Sakai], gi\|1336... gi\|195935835 - gi\|195935835\|ref\|ZP_03081217.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC4024] gi\|208728580, gi... - gi\|208808779\|ref\|ZP_03251116.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC4206], gi\|... gi\|168760898, gi... - gi\|189368529\|gb\|EDU86945.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC4501], gi\|1687... gi\|168766309, gi... - gi\|189364196\|gb\|EDU82615.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC4486], gi\|1687... gi\|187769938, gi... - gi\|187769938\|gb\|EDU33782.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC4196], gi\|1687... gi\|189001628, gi... - gi\|189001628\|gb\|EDU70614.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC4076], gi\|1687... gi\|168748103, gi... - gi\|188017417\|gb\|EDU55539.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC4113], gi\|1687... gi\|168755219, gi... - gi\|189357516\|gb\|EDU75935.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC4401], gi\|1687... gi\|208734730, gi... - gi\|208813453\|ref\|ZP_03254782.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC4045], gi\|... gi\|254595471, gi... - gi\|254796071\|ref\|YP_003080908.1\| replicative DNA helicase [Escherichia coli O157:H7 str. TW14359], g... gi\|208738898, gi... - gi\|208818775\|ref\|ZP_03259095.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC4042], gi\|... DNAB_ECO57 - Replicative DNA helicase OS=Escherichia coli O157:H7 GN=dnaB PE=3 SV=1 gi\|209398031, gi... - gi\|209398031\|ref\|YP_002273592.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC4115], gi... gi\|209751276, gi... - pir\|\|F86098 replicative DNA helicase, part of primosome [imported] - Escherichia coli (strain O157:H... gi\|217325653, gi... - gi\|217325653\|ref\|ZP_03441737.1\| replicative DNA helicase [Escherichia coli O157:H7 str. TW14588], gi...	176.0	[0..2]	[119..12]
gi\|26250838, gi\|... - gi\|26250838\|ref\|NP_756878.1\| replicative DNA helicase [Escherichia coli CFT073], gi\|26111269\|gb\|AAN8... gi\|91075152, gi\|... - gi\|91213578\|ref\|YP_543564.1\| replicative DNA helicase [Escherichia coli UTI89], gi\|91075152\|gb\|ABE10... gi\|237703612, gi... - gi\|237703612\|ref\|ZP_04534093.1\| replicative DNA helicase [Escherichia sp. 3_2_53FAA], gi\|226901524\|g...	175.0	[0..3]	[119..25]
gi\|145765 - gi\|145765\|gb\|AAA23690.1\| helicase [Escherichia coli]	175.0	[0..2]	[119..12]
gi\|218367894, gi... - gi\|218561125\|ref\|YP_002394038.1\| replicative DNA helicase [Escherichia coli S88], gi\|218367894\|emb\|C... DNAB_ECOL6 - Replicative DNA helicase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=dnaB PE=3... DNAB_ECOL6 - Replicative DNA helicase OS=Escherichia coli O6 GN=dnaB PE=3 SV=2 gi\|227886938, gi... - gi\|227886938\|ref\|ZP_04004743.1\| replicative DNA helicase [Escherichia coli 83972], gi\|227836079\|gb\|E... gi\|117626322, gi... - gi\|117626322\|ref\|YP_859645.1\| replicative DNA helicase [Escherichia coli APEC O1], gi\|115515446\|gb\|A...	175.0	[0..3]	[119..13]
gi\|84354845, gi\|... - gi\|84354845\|ref\|ZP_00979742.1\| COG0305: Replicative DNA helicase [Burkholderia cenocepacia PC184], g...	173.0	[0..4]	[119..2]
gi\|17428325 - gi\|17428325\|emb\|CAD15013.1\| probable replicative dna helicase protein [Ralstonia solanacearum GMI100... gi\|17546030 - gi\|17546030\|ref\|NP_519432.1\| replicative DNA helicase [Ralstonia solanacearum GMI1000]	173.0	[0..2]	[119..10]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASHMERDPQ VAGLKVPPHS IEAEQSVLGG LMLDNERWDD VAERVVADDF YTRPHRHIFT  60
   61 EMARLQESGS PIDLITLAES LERQGQLDSV GGFAYLAELS KNTPSAANIS AYADIVRER

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.69897
Match:	1b79A
Description:	N-terminal domain of DnaB helicase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.05061864244584	bayes_pls_golite062009
hydrolase activity	0.44494241711137	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.28281187054875	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.28277583716495	bayes_pls_golite062009
pyrophosphatase activity	0.28165889302373	bayes_pls_golite062009
nucleoside-triphosphatase activity	0.27766094528151	bayes_pls_golite062009
ATPase activity	0.25346737810249	bayes_pls_golite062009
ATPase activity, coupled	0.23919512904758	bayes_pls_golite062009
helicase activity	0.19288769515427	bayes_pls_golite062009
DNA-dependent ATPase activity	0.18576939059978	bayes_pls_golite062009
DNA helicase activity	0.18456169012231	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: