YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|5107488, gi\|5...
Organism:	Escherichia coli
Length:	235 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|5107488, gi|5....

Description	E-value	Query Range	Subject Range
RPOA_SALCH - DNA-directed RNA polymerase subunit alpha OS=Salmonella choleraesuis GN=rpoA PE=3 SV=1 RPOA_SALCH - DNA-directed RNA polymerase subunit alpha OS=Salmonella choleraesuis GN=rpoA PE=3 SV=1 RPOA_SALCH - DNA-directed RNA polymerase subunit alpha OS=Salmonella choleraesuis (strain SC-B67) GN=rpoA PE=3 SV...	294.0	[0..1]	[235..1]
gi\|85676746, gi\|... - gi\|89110715\|ref\|AP_004495.1\| RNA polymerase, alpha subunit [Escherichia coli str. K-12 substr. W3110... gi\|75227386, gi\|... - gi\|75227386\|ref\|ZP_00714162.1\| COG0202: DNA-directed RNA polymerase, alpha subunit/40 kD subunit [Es... gi\|193066493, gi... - gi\|75255407\|ref\|ZP_00727219.1\| COG0202: DNA-directed RNA polymerase, alpha subunit/40 kD subunit [Es... gi\|75208445, gi\|... - gi\|75208445\|ref\|ZP_00708774.1\| COG0202: DNA-directed RNA polymerase, alpha subunit/40 kD subunit [Es... gi\|192955148, gi... - gi\|75214900\|ref\|ZP_00713379.1\| COG0202: DNA-directed RNA polymerase, alpha subunit/40 kD subunit [Es... RPOA_SALPA - DNA-directed RNA polymerase subunit alpha OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=r... RPOA_SHIBS - DNA-directed RNA polymerase subunit alpha OS=Shigella boydii serotype 4 (strain Sb227) GN=rpoA PE=3 ... gi\|188490199, gi... - gi\|75511174\|ref\|ZP_00733886.1\| COG0202: DNA-directed RNA polymerase, alpha subunit/40 kD subunit [Es... RPOA_SHISS - DNA-directed RNA polymerase subunit alpha OS=Shigella sonnei (strain Ss046) GN=rpoA PE=3 SV=1 RPOA_ECO24 - DNA-directed RNA polymerase subunit alpha OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=rp... RPOA_ECOHS - DNA-directed RNA polymerase subunit alpha OS=Escherichia coli O9:H4 (strain HS) GN=rpoA PE=3 SV=1 RPOA_SALTY - DNA-directed RNA polymerase subunit alpha OS=Salmonella typhimurium GN=rpoA PE=3 SV=1 gi\|194421072, gi... - gi\|83584653\|ref\|ZP_00923320.1\| COG0202: DNA-directed RNA polymerase, alpha subunit/40 kD subunit [Es... EG10893 - RNA polymerase, alpha subunit / RNA polymerase, alpha subunit; binds Zn(II) gi\|187428720, gi... - gi\|75176299\|ref\|ZP_00696451.1\| COG0202: DNA-directed RNA polymerase, alpha subunit/40 kD subunit [Sh... gi\|213647329 - gi\|213647329\|ref\|ZP_03377382.1\| DNA-directed RNA polymerase subunit alpha [Salmonella enterica subsp... gi\|213859911 - gi\|213859911\|ref\|ZP_03385615.1\| DNA-directed RNA polymerase subunit alpha [Salmonella enterica subsp... gi\|254795232, gi... - gi\|254795232\|ref\|YP_003080069.1\| RNA polymerase, alpha subunit [Escherichia coli O157:H7 str. TW1435... gi\|213999759 - gi\|213999759\|ref\|ZP_03410494.1\| DNA-directed RNA polymerase subunit alpha [Salmonella enterica subsp... gi\|254163223, gi... - gi\|254163223\|ref\|YP_003046331.1\| DNA-directed RNA polymerase subunit alpha [Escherichia coli B str. ... gi\|215266667, gi... - gi\|215488595\|ref\|YP_002331026.1\| DNA-directed RNA polymerase subunit alpha [Escherichia coli O127:H6... gi\|254038456, gi... - gi\|254038456\|ref\|ZP_04872512.1\| DNA-directed RNA polymerase [Escherichia sp. 1_1_43], gi\|226838962\|g... RPOA_SHIFL - DNA-directed RNA polymerase subunit alpha OS=Shigella flexneri GN=rpoA PE=3 SV=1 gi\|217324841, gi... - gi\|217324841\|ref\|ZP_03440925.1\| DNA-directed RNA polymerase, alpha subunit [Escherichia coli O157:H7... gi\|254289973, gi... - gi\|254289973\|ref\|YP_003055721.1\| DNA-directed RNA polymerase subunit alpha [Escherichia coli BL21(DE... RPOA_SALTY - DNA-directed RNA polymerase subunit alpha OS=Salmonella typhimurium GN=rpoA PE=3 SV=1 gi\|218358112, gi... - gi\|218550571\|ref\|YP_002384362.1\| DNA-directed RNA polymerase subunit alpha [Escherichia fergusonii A... gi\|251786549, gi... - gi\|251786549\|ref\|YP_003000853.1\| hypothetical protein B21_03097 [Escherichia coli BL21], gi\|24237882... RPOA_SALTI - DNA-directed RNA polymerase subunit alpha OS=Salmonella typhi GN=rpoA PE=3 SV=1 gi\|218362621, gi... - gi\|218555853\|ref\|YP_002388766.1\| DNA-directed RNA polymerase subunit alpha [Escherichia coli IAI1], ... gi\|238913870 - gi\|238913870\|ref\|ZP_04657707.1\| DNA-directed RNA polymerase subunit alpha [Salmonella enterica subsp... gi\|22774035 - gi\|22774035\|gb\|AAN07185.1\| RNA polymerase alpha subunit [Cloning vector pIA423] gi\|218367126, gi... - gi\|218560357\|ref\|YP_002393270.1\| DNA-directed RNA polymerase subunit alpha [Escherichia coli S88], g... gi\|238902386, gi... - gi\|238902386\|ref\|YP_002928182.1\| RNA polymerase, alpha subunit [Escherichia coli BW2952], gi\|2388634... RPOA_SALTY - DNA-directed RNA polymerase subunit alpha OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 70... gi\|208726332, gi... - gi\|208806531\|ref\|ZP_03248868.1\| DNA-directed RNA polymerase, alpha subunit [Escherichia coli O157:H7... gi\|237703025, gi... - gi\|237703025\|ref\|ZP_04533506.1\| RNA polymerase [Escherichia sp. 3_2_53FAA], gi\|226902289\|gb\|EEH88548... gi\|24114573, gi\|... - gi\|24114573\|ref\|NP_709083.1\| DNA-directed RNA polymerase subunit alpha [Shigella flexneri 2a str. 30... gi\|208734774, gi... - gi\|208813497\|ref\|ZP_03254826.1\| DNA-directed RNA polymerase, alpha subunit [Escherichia coli O157:H7... RPOA_ECOL6 - DNA-directed RNA polymerase subunit alpha OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / U... gi\|208739032, gi... - gi\|208818909\|ref\|ZP_03259229.1\| DNA-directed RNA polymerase, alpha subunit [Escherichia coli O157:H7... gi\|29139993, gi\|... - gi\|29144355\|ref\|NP_807697.1\| DNA-directed RNA polymerase subunit alpha [Salmonella enterica subsp. e... RPOA_ECOUT - DNA-directed RNA polymerase subunit alpha OS=Escherichia coli (strain UTI89 / UPEC) GN=rpoA PE=3 SV=... gi\|209158188, gi... - gi\|209396788\|ref\|YP_002272751.1\| DNA-directed RNA polymerase, alpha subunit [Escherichia coli O157:H... gi\|30043666, gi\|... - gi\|30065404\|ref\|NP_839575.1\| DNA-directed RNA polymerase subunit alpha [Shigella flexneri 2a str. 24... gi\|209914020, gi... - gi\|209920761\|ref\|YP_002294845.1\| DNA-directed RNA polymerase subunit alpha [Escherichia coli SE11], ... RPOA_ECO57 - DNA-directed RNA polymerase subunit alpha OS=Escherichia coli O157:H7 GN=rpoA PE=3 SV=1 gi\|213027592 - gi\|213027592\|ref\|ZP_03342039.1\| DNA-directed RNA polymerase subunit alpha [Salmonella enterica subsp... EG10893 - RNA polymerase, alpha subunit / RNA polymerase, alpha subunit; binds Zn(II) gi\|213052883 - gi\|213052883\|ref\|ZP_03345761.1\| DNA-directed RNA polymerase subunit alpha [Salmonella enterica subsp... gi\|16762868 - gi\|16762868\|ref\|NP_458485.1\| DNA-directed RNA polymerase subunit alpha [Salmonella enterica subsp. e... gi\|213425776 - gi\|213425776\|ref\|ZP_03358526.1\| DNA-directed RNA polymerase subunit alpha [Salmonella enterica subsp... gi\|13363633, gi\|... - gi\|15833414\|ref\|NP_312187.1\| DNA-directed RNA polymerase subunit alpha [Escherichia coli O157:H7 str... RPOA_ECOL5 - DNA-directed RNA polymerase subunit alpha OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=rpoA... RPOA_SHIF8 - DNA-directed RNA polymerase subunit alpha OS=Shigella flexneri serotype 5b (strain 8401) GN=rpoA PE=... gi\|218429146, gi... - gi\|218691582\|ref\|YP_002399794.1\| DNA-directed RNA polymerase subunit alpha [Escherichia coli ED1a], ... RPOA_CITK8 - DNA-directed RNA polymerase subunit alpha OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 /... gi\|218353720, gi... - gi\|218696988\|ref\|YP_002404655.1\| DNA-directed RNA polymerase subunit alpha [Escherichia coli 55989],... gi\|218372044, gi... - gi\|218702058\|ref\|YP_002409687.1\| DNA-directed RNA polymerase subunit alpha [Escherichia coli IAI39],... gi\|218706903, gi... - gi\|218706903\|ref\|YP_002414422.1\| DNA-directed RNA polymerase subunit alpha [Escherichia coli UMN026]... gi\|195628904, gi... - gi\|195628904\|gb\|EDX48314.1\| DNA-directed RNA polymerase, alpha subunit [Salmonella enterica subsp. e... gi\|168752256, gi... - gi\|188013845\|gb\|EDU51967.1\| DNA-directed RNA polymerase, alpha subunit [Escherichia coli O157:H7 str... gi\|168758523, gi... - gi\|189354678\|gb\|EDU73097.1\| DNA-directed RNA polymerase, alpha subunit [Escherichia coli O157:H7 str... gi\|168764978, gi... - gi\|189365126\|gb\|EDU83542.1\| DNA-directed RNA polymerase, alpha subunit [Escherichia coli O157:H7 str... gi\|189361767, gi... - gi\|189361767\|gb\|EDU80186.1\| DNA-directed RNA polymerase, alpha subunit [Escherichia coli O157:H7 str... RPOA_ECOLI - DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP alpha subunit) (Transcriptase alpha chain... gi\|168777847, gi... - gi\|187766995\|gb\|EDU30839.1\| DNA-directed RNA polymerase, alpha subunit [Escherichia coli O157:H7 str... gi\|189374058, gi... - gi\|189374058\|gb\|EDU92474.1\| DNA-directed RNA polymerase, alpha subunit [Escherichia coli O157:H7 str... gi\|168802724, gi... - gi\|189375355\|gb\|EDU93771.1\| DNA-directed RNA polymerase, alpha subunit [Escherichia coli O157:H7 str... lcl\|NC_016856.1_... - [gene=rpoA] [protein=DNA-directed RNA polymerase subunit alpha] [protein_id=YP_005239605.1] [locatio... gi\|160867379, gi... - gi\|161506032\|ref\|YP_001573144.1\| DNA-directed RNA polymerase subunit alpha [Salmonella enterica subs... gi\|161365804, gi... - gi\|161616440\|ref\|YP_001590405.1\| DNA-directed RNA polymerase subunit alpha [Salmonella enterica subs... RPOA_ECOK1 - DNA-directed RNA polymerase subunit alpha OS=Escherichia coli O1:K1 / APEC GN=rpoA PE=3 SV=1 gi\|168264704, gi... - gi\|205346884\|gb\|EDZ33515.1\| DNA-directed RNA polymerase, alpha subunit [Salmonella enterica subsp. e... gi\|15803822, gi\|... - gi\|15803822\|ref\|NP_289856.1\| DNA-directed RNA polymerase subunit alpha [Escherichia coli O157:H7 EDL... gi\|124532213, gi... - gi\|124532213\|ref\|ZP_01702151.1\| DNA-directed RNA polymerase, alpha subunit [Escherichia coli B], gi\|... gi\|197248562, gi... - gi\|197248562\|ref\|YP_002148335.1\| DNA-directed RNA polymerase, alpha subunit [Salmonella enterica sub... gi\|197241195, gi... - gi\|197262940\|ref\|ZP_03163014.1\| DNA-directed RNA polymerase, alpha subunit [Salmonella enterica subs... gi\|197364264, gi... - gi\|197364264\|ref\|YP_002143901.1\| DNA-directed RNA polymerase subunit alpha [Salmonella enterica subs... gi\|197939448, gi... - gi\|198244932\|ref\|YP_002217378.1\| DNA-directed RNA polymerase, alpha subunit [Salmonella enterica sub... gi\|199604787, gi... - gi\|200387689\|ref\|ZP_03214301.1\| DNA-directed RNA polymerase, alpha subunit [Salmonella enterica subs... gi\|204319833, gi... - gi\|204931405\|ref\|ZP_03222074.1\| DNA-directed RNA polymerase, alpha subunit [Salmonella enterica subs... gi\|205274738, gi... - gi\|205354957\|ref\|YP_002228758.1\| DNA-directed RNA polymerase subunit alpha [Salmonella enterica subs... gi\|206710460, gi... - gi\|207858657\|ref\|YP_002245308.1\| DNA-directed RNA polymerase subunit alpha [Salmonella enterica subs... gi\|170018469, gi... - gi\|170018469\|ref\|YP_001723423.1\| DNA-directed RNA polymerase subunit alpha [Escherichia coli ATCC 87... gi\|170082815, gi... - gi\|170082815\|ref\|YP_001732135.1\| RNA polymerase, alpha subunit [Escherichia coli str. K-12 substr. D... gi\|170683426, gi... - gi\|170683426\|ref\|YP_001745557.1\| DNA-directed RNA polymerase, alpha subunit [Escherichia coli SMS-3-... gi\|194401315, gi... - gi\|194442652\|ref\|YP_002042666.1\| DNA-directed RNA polymerase, alpha subunit [Salmonella enterica sub... gi\|194405684, gi... - gi\|194447380\|ref\|YP_002047439.1\| DNA-directed RNA polymerase subunit alpha [Salmonella enterica subs... gi\|194469288, gi... - gi\|194469288\|ref\|ZP_03075272.1\| DNA-directed RNA polymerase, alpha subunit [Salmonella enterica subs... gi\|194735121, gi... - gi\|194735121\|ref\|YP_002116358.1\| DNA-directed RNA polymerase, alpha subunit [Salmonella enterica sub... gi\|195939843 - gi\|195939843\|ref\|ZP_03085225.1\| DNA-directed RNA polymerase subunit alpha [Escherichia coli O157:H7 ... gi\|283788069\|ref... - DNA-directed RNA polymerase alpha chain [Citrobacter rodentium ICC168] RPOA_SALPA - DNA-directed RNA polymerase subunit alpha OS=Salmonella paratyphi A GN=rpoA PE=3 SV=1 RPOA_SALTI - DNA-directed RNA polymerase subunit alpha OS=Salmonella typhi GN=rpoA PE=3 SV=1 RPOA_ECOL6 - DNA-directed RNA polymerase subunit alpha OS=Escherichia coli O6 GN=rpoA PE=3 SV=1	294.0	[0..1]	[235..1]
gi\|89104531, gi\|... - gi\|89104531\|ref\|ZP_01177071.1\| COG0202: DNA-directed RNA polymerase, alpha subunit/40 kD subunit [Ye... gi\|149290126, gi... - gi\|150260718\|ref\|ZP_01917446.1\| DNA-directed RNA polymerase alpha chain [Yersinia pestis CA88-4125],... gi\|167055293, gi... - gi\|167425603\|ref\|ZP_02317356.1\| DNA-directed RNA polymerase, alpha subunit [Yersinia pestis biovar M... gi\|169749103, gi... - gi\|170022569\|ref\|YP_001719074.1\| DNA-directed RNA polymerase subunit alpha [Yersinia pseudotuberculo... gi\|229690484, gi... - gi\|229842174\|ref\|ZP_04462329.1\| RNA polymerase, alpha subunit [Yersinia pestis biovar Orientalis str... gi\|186897159, gi... - gi\|186897159\|ref\|YP_001874271.1\| DNA-directed RNA polymerase subunit alpha [Yersinia pseudotuberculo... gi\|229840092, gi... - gi\|229840092\|ref\|ZP_04460251.1\| RNA polymerase, alpha subunit [Yersinia pestis biovar Orientalis str... RPOA_YERPE - DNA-directed RNA polymerase subunit alpha OS=Yersinia pestis GN=rpoA PE=3 SV=1 gi\|229836284, gi... - gi\|229836284\|ref\|ZP_04456451.1\| RNA polymerase, alpha subunit [Yersinia pestis Pestoides A], gi\|2297... gi\|45434947, gi\|... - gi\|45440092\|ref\|NP_991631.1\| DNA-directed RNA polymerase subunit alpha [Yersinia pestis biovar Micro... RPOA_YERPA - DNA-directed RNA polymerase subunit alpha OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=rpoA PE... gi\|22127885, gi\|... - gi\|22127885\|ref\|NP_671308.1\| DNA-directed RNA polymerase subunit alpha [Yersinia pestis KIM], gi\|219... RPOA_YERPN - DNA-directed RNA polymerase subunit alpha OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=rpoA P... gi\|115346051, gi... - gi\|218927440\|ref\|YP_002345315.1\| DNA-directed RNA polymerase subunit alpha [Yersinia pestis CO92], g... RPOA_YERPS - DNA-directed RNA polymerase subunit alpha OS=Yersinia pseudotuberculosis serotype I (strain IP32953)... RPOA_YERPP - DNA-directed RNA polymerase subunit alpha OS=Yersinia pestis (strain Pestoides F) GN=rpoA PE=3 SV=1 gi\|165927880, gi... - gi\|165927880\|ref\|ZP_02223712.1\| DNA-directed RNA polymerase, alpha subunit [Yersinia pestis biovar O... gi\|165990525, gi... - gi\|166010435\|ref\|ZP_02231333.1\| DNA-directed RNA polymerase, alpha subunit [Yersinia pestis biovar A... gi\|162353351, gi... - gi\|77633035\|ref\|ZP_00795192.1\| COG0202: DNA-directed RNA polymerase, alpha subunit/40 kD subunit [Ye... gi\|166213170, gi... - gi\|166213170\|ref\|ZP_02239205.1\| DNA-directed RNA polymerase, alpha subunit [Yersinia pestis biovar A... RPOA_YERP3 - DNA-directed RNA polymerase subunit alpha OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31... gi\|167398622, gi... - gi\|167398622\|ref\|ZP_02304146.1\| DNA-directed RNA polymerase, alpha subunit [Yersinia pestis biovar A... gi\|167419336, gi... - gi\|167419336\|ref\|ZP_02311089.1\| DNA-directed RNA polymerase, alpha subunit [Yersinia pestis biovar O... RPOA_YERPS - DNA-directed RNA polymerase subunit alpha OS=Yersinia pseudotuberculosis GN=rpoA PE=1 SV=1	294.0	[0..1]	[235..1]
gi\|251756736, gi... - gi\|253690158\|ref\|YP_003019348.1\| DNA-directed RNA polymerase, alpha subunit [Pectobacterium carotovo... gi\|255056843, gi... - gi\|255056843\|ref\|ZP_05309044.1\| DNA-directed RNA polymerase, alpha subunit [Pectobacterium wasabiae ... gi\|227115247 - gi\|227115247\|ref\|ZP_03828903.1\| DNA-directed RNA polymerase subunit alpha [Pectobacterium carotovoru... RPOA_ERWCT - DNA-directed RNA polymerase subunit alpha OS=Erwinia carotovora subsp. atroseptica GN=rpoA PE=3 SV=1 gi\|227328924 - gi\|227328924\|ref\|ZP_03832948.1\| DNA-directed RNA polymerase subunit alpha [Pectobacterium carotovoru... RPOA_PECAS - DNA-directed RNA polymerase subunit alpha OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BA...	294.0	[0..1]	[235..1]
RPOA_SHIDS - DNA-directed RNA polymerase subunit alpha OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=rpoA ...	294.0	[0..1]	[235..1]
gi\|238792960, gi... - gi\|77978251\|ref\|ZP_00833683.1\| COG0202: DNA-directed RNA polymerase, alpha subunit/40 kD subunit [Ye... gi\|77957307, gi\|... - gi\|77957307\|ref\|ZP_00821366.1\| COG0202: DNA-directed RNA polymerase, alpha subunit/40 kD subunit [Ye... gi\|238707693, gi... - gi\|238754197\|ref\|ZP_04615555.1\| DNA-directed RNA polymerase subunit alpha [Yersinia ruckeri ATCC 294... gi\|238758785, gi... - gi\|238758785\|ref\|ZP_04619959.1\| DNA-directed RNA polymerase subunit alpha [Yersinia aldovae ATCC 352...	294.0	[0..1]	[235..1]
gi\|42799 - gi\|42799\|emb\|CAA26395.1\| unnamed protein product [Escherichia coli]	294.0	[0..1]	[235..1]
gi\|238752666, gi... - gi\|238752666\|ref\|ZP_04614137.1\| DNA-directed RNA polymerase subunit alpha [Yersinia rohdei ATCC 4338... gi\|238722914, gi... - gi\|77974965\|ref\|ZP_00830502.1\| COG0202: DNA-directed RNA polymerase, alpha subunit/40 kD subunit [Ye... RPOA_YERE8 - DNA-directed RNA polymerase subunit alpha OS=Yersinia enterocolitica serotype O:8 / biotype 1B (stra...	293.0	[0..1]	[235..1]
gi\|238797219, gi... - gi\|77962764\|ref\|ZP_00826581.1\| COG0202: DNA-directed RNA polymerase, alpha subunit/40 kD subunit [Ye...	293.0	[0..1]	[235..1]
gi\|253783114, gi... - gi\|253991664\|ref\|YP_003043020.1\| DNA-directed RNA polymerase alpha chain [Photorhabdus asymbiotica],... RPOA_PHOLL - DNA-directed RNA polymerase subunit alpha OS=Photorhabdus luminescens subsp. laumondii GN=rpoA PE=3 ... RPOA_PHOLL - DNA-directed RNA polymerase subunit alpha OS=Photorhabdus luminescens subsp. laumondii (strain DSM 1...	293.0	[0..1]	[235..1]

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Predicted Domain #1

Region A:
Residues: [1-235]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQGSVTEFLK PRLVDIEQVS STHAKVTLEP LERGFGHTLG NALRAILLSS MPGCAVTEVE  60
   61 IDGVLHEYST KEGVQEDILE ILLNLKGLAV RVQGKDEVIL TLNKSGIGPV TAADITHDGD 120
  121 VEIVKPQHVI CHLTDENASI SMRIKVQRGR GYVPASTRIH SEEDERPIGR LLVDACYSPV 180
  181 ERIAYNVEAA RVEQRTDLDK LVIEMETNGT IDPEEAIRRA ATILAEQLEA FVDLR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	78.69897
Match:	1bdfA
Description:	RNA polymerase alpha; RNA polymerase alpha subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.619856985357098	bayes_pls_golite062009
transferase activity	0.03905230593655	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: