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Protein Overview: gi|24114573, gi|...

General Information:
Name(s) found: gi|24114573 [NCBI NR]
gi|24053769 [NCBI NR]
Description(s) found:
Found 5 descriptions.
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  • gi|24114573|ref|NP_709083.1| DNA-directed RNA polymerase subunit alpha [Shigella flexneri 2a str. 301] [NCBI NR]
  • gi|24053769|gb|AAN44790.1| RNA polymerase, alpha subunit [Shigella flexneri 2a str. 301] [NCBI NR]
    • Organism: Shigella flexneri 2a str. 301
    Length: 329 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQGSVTEFLK PRLVDIEQVS STHAKVTLEP LERGFGHTLG NALRRILLSS MPGCAVTEVE  60
   61 IDGVLHEYST KEGVQEDILE ILLNLKGLAV RVQGKDEVIL TLNKSGIGPV TAADITHDGD 120
  121 VEIVKPQHVI CHLTDENASI SMRIKVQRGR GYVPASTRIH SEEDERPIGR LLVDACYSPV 180
  181 ERIAYNVEAA RVEQRTDLDK LVIEMETNGT IDPEEAIRRA ATILAEQLEA FVDLRDVRQP 240
  241 EVKEEKPEFD PILLRPVDDL ELTVRSANCL KAEAIHYIGD LVQRTEVELL KTPNLGKKSL 300
  301 TEIKDVLASR GLSLGMRLEN WPPASIADE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..237] PSI-BLAST 75.69897 RNA polymerase alpha; RNA polymerase alpha subunit
    2 View Details [238..329] PSI-BLAST 30.0 THE COOH-TERMINAL DOMAIN OF RNA POLYMERASE ALPHA SUBUNIT

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • DNA-directed RNA polymerase activity
    		•  9.7234602659063 bayes_pls_golite062009
  • RNA polymerase activity
    		•  9.7234602659063 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  7.15121167353057 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  5.00321253017182 bayes_pls_golite062009
  • transferase activity
    		•  4.43019288788219 bayes_pls_golite062009
  • binding
    		•  1.71036005361152 bayes_pls_golite062009
  • catalytic activity
    		•  1.14991565197115 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.912313560512218 bayes_pls_golite062009
  • DNA binding
    		•  0.830570793255009 bayes_pls_golite062009
  • protein binding
    		•  0.224464975113154 bayes_pls_golite062009
    2
    Term Confidence Notes
  • DNA-directed RNA polymerase activity
    		•  9.80450362116562 bayes_pls_golite062009
  • RNA polymerase activity
    		•  9.80450362116562 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  7.23643031680113 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  5.11216561090158 bayes_pls_golite062009
  • transferase activity
    		•  4.56918356543307 bayes_pls_golite062009
  • catalytic activity
    		•  1.48339787978627 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle