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Protein Overview: gi|167419336, gi...

General Information:
Name(s) found: gi|167419336 [NCBI NR]
gi|166963330 [NCBI NR]
Description(s) found:
Found 2 descriptions.
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  • gi|167419336|ref|ZP_02311089.1| DNA-directed RNA polymerase, alpha subunit [Yersinia pestis biovar Orientalis str. MG05-1020] [NCBI NR]
  • gi|166963330|gb|EDR59351.1| DNA-directed RNA polymerase, alpha subunit [Yersinia pestis biovar Orientalis str. MG05-1020] [NCBI NR]
    • Organism: Yersinia pestis biovar Orientalis str. MG05-1020
    Length: 329 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQGSVTEFLK PRLVDIEQVS STHAKVTLEP LERGFGHTLG NALRRILLSS MPGCAVTEVE  60
   61 IDGVLHEYST KEGVQEDILE ILLNLKGLAV RVQGKDEVIL TLNKSGIGPV TAADITHDGD 120
  121 VEIVKPQHVI CHLTDENASI NMRIKVQRGR GYVPASARIH SEEDERPIGR LLVDACYSPV 180
  181 ERIAYNVEAA RVEQRTDLDK LVIEMETNGT IDPEEAIRRA ATILAEQLEA FVDLRDVRQP 240
  241 EVKEEKPEFD PILLRPVDDL ELTVRSANCL KAEAIHYIGD LVQRTEVELL KTPNLGKKSL 300
  301 TEIKDVLASR GLSLGMRLEN WPPASIADE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..236] PSI-BLAST 80.522879 RNA polymerase alpha; RNA polymerase alpha subunit
    2 View Details [237..329] PSI-BLAST 31.154902 THE COOH-TERMINAL DOMAIN OF RNA POLYMERASE ALPHA SUBUNIT

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • DNA-directed RNA polymerase activity
    		•  8.95763217796707 bayes_pls_golite062009
  • RNA polymerase activity
    		•  8.95763217796707 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  6.40098308297479 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  4.33401073482737 bayes_pls_golite062009
  • transferase activity
    		•  3.84777794959854 bayes_pls_golite062009
  • binding
    		•  1.88859598298092 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.03997541201669 bayes_pls_golite062009
  • DNA binding
    		•  0.995037722982526 bayes_pls_golite062009
  • catalytic activity
    		•  0.902495165806215 bayes_pls_golite062009
  • protein binding
    		•  0.405493497515594 bayes_pls_golite062009
    2
    Term Confidence Notes
  • DNA-directed RNA polymerase activity
    		•  9.80450362116562 bayes_pls_golite062009
  • RNA polymerase activity
    		•  9.80450362116562 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  7.23643031680113 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  5.11216561090158 bayes_pls_golite062009
  • transferase activity
    		•  4.56918356543307 bayes_pls_golite062009
  • catalytic activity
    		•  1.48339787978627 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle