| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.054] [SVM Score: 0.693500078091] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| DIM1 |
|
|
|
| NOP1 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| nuclear outer membrane | 1.8468E-4 | 2 | 86 | 2 | 6292 |
| nuclear membrane | 2.3525E-4 | 2 | 97 | 2 | 6292 |
| outer membrane | 7.9595E-4 | 2 | 178 | 2 | 6292 |
| organelle outer membrane | 7.9595E-4 | 2 | 178 | 2 | 6292 |
| nuclear envelope | 9.9543E-4 | 2 | 199 | 2 | 6292 |
| nucleolus | 1.1194E-3 | 2 | 211 | 2 | 6292 |
| nuclear membrane-endoplasmic reticulum network | 1.3539E-3 | 2 | 232 | 2 | 6292 |
| endomembrane system | 3.9918E-3 | 2 | 398 | 2 | 6292 |
| nuclear lumen | 5.1728E-3 | 2 | 453 | 2 | 6292 |
| envelope | 6.43E-3 | 2 | 505 | 2 | 6292 |
| organelle envelope | 6.43E-3 | 2 | 505 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| rRNA modification | 7.7306E-6 | 2 | 18 | 2 | 6292 |
| RNA modification | 1.2202E-4 | 2 | 70 | 2 | 6292 |
| rRNA processing | 4.1068E-4 | 2 | 128 | 2 | 6292 |
| rRNA metabolic process | 4.7071E-4 | 2 | 137 | 2 | 6292 |
| ncRNA processing | 1.1624E-3 | 2 | 215 | 2 | 6292 |
| snoRNA 3'-end processing | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| ncRNA metabolic process | 1.6621E-3 | 2 | 257 | 2 | 6292 |
| snoRNA processing | 2.224E-3 | 2 | 7 | 1 | 6292 |
| ribosome biogenesis | 3.0157E-3 | 2 | 346 | 2 | 6292 |
| ribonucleoprotein complex biogenesis | 3.5243E-3 | 2 | 374 | 2 | 6292 |
| RNA processing | 3.6384E-3 | 2 | 380 | 2 | 6292 |
| ncRNA 3'-end processing | 3.811E-3 | 2 | 12 | 1 | 6292 |
| snoRNA metabolic process | 5.7138E-3 | 2 | 18 | 1 | 6292 |
| RNA methylation | 6.0308E-3 | 2 | 19 | 1 | 6292 |
| macromolecule modification | 8.1649E-3 | 2 | 569 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| methyltransferase activity | 2.304E-4 | 2 | 96 | 2 | 6292 |
| transferase activity, transferring one-carbon groups | 2.4511E-4 | 2 | 99 | 2 | 6292 |
| rRNA (adenine) methyltransferase activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| rRNA (adenine-N6,N6-)-dimethyltransferase activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| rRNA methyltransferase activity | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| N-methyltransferase activity | 7.9314E-3 | 2 | 25 | 1 | 6292 |
| RNA methyltransferase activity | 8.248E-3 | 2 | 26 | 1 | 6292 |