| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.053] [SVM Score: 0.7087741477] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| LSM5 |
|
|
|
| STO1 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| nuclear cap binding complex | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| RNA cap binding complex | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| U6 snRNP | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| commitment complex | 3.811E-3 | 2 | 12 | 1 | 6292 |
| U2-type spliceosomal complex | 3.811E-3 | 2 | 12 | 1 | 6292 |
| ribonucleoprotein complex | 6.6615E-3 | 2 | 514 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| mRNA catabolic process | 1.1854E-4 | 2 | 69 | 2 | 6292 |
| RNA catabolic process | 1.5966E-4 | 2 | 80 | 2 | 6292 |
| nuclear mRNA splicing, via spliceosome | 2.4511E-4 | 2 | 99 | 2 | 6292 |
| RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | 2.5011E-4 | 2 | 100 | 2 | 6292 |
| RNA splicing, via transesterification reactions | 2.8654E-4 | 2 | 107 | 2 | 6292 |
| RNA splicing | 4.3685E-4 | 2 | 132 | 2 | 6292 |
| mRNA processing | 6.1087E-4 | 2 | 156 | 2 | 6292 |
| mRNA metabolic process | 1.1408E-3 | 2 | 213 | 2 | 6292 |
| cellular macromolecule catabolic process | 1.7674E-3 | 2 | 265 | 2 | 6292 |
| macromolecule catabolic process | 2.1762E-3 | 2 | 294 | 2 | 6292 |
| nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| RNA processing | 3.6384E-3 | 2 | 380 | 2 | 6292 |
| cellular catabolic process | 4.3405E-3 | 2 | 415 | 2 | 6292 |
| catabolic process | 6.2027E-3 | 2 | 496 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| RNA binding | 3.3934E-3 | 2 | 367 | 2 | 6292 |