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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.7480754178]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

transcription factor complex 1.2556E-4 2 71 2 6292
transcription factor TFIIIB complex 9.5344E-4 2 3 1 6292
nucleoplasm part 1.5102E-3 2 245 2 6292
nucleoplasm 1.7541E-3 2 264 2 6292
transcription factor TFIIIC complex 1.9064E-3 2 6 1 6292
nuclear lumen 5.1728E-3 2 453 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

transcription initiation from RNA polymerase III promoter 2.779E-6 2 11 2 6292
transcription from RNA polymerase III promoter 3.552E-5 2 38 2 6292
transcription initiation 8.3521E-5 2 58 2 6292
protein complex assembly 6.0304E-4 2 155 2 6292
protein complex biogenesis 6.0304E-4 2 155 2 6292
macromolecular complex assembly 1.9877E-3 2 281 2 6292
macromolecular complex subunit organization 3.2108E-3 2 357 2 6292
cellular component assembly 3.7349E-3 2 385 2 6292
transcription, DNA-dependent 6.3792E-3 2 503 2 6292
RNA biosynthetic process 6.5067E-3 2 508 2 6292
transcription 7.6839E-3 2 552 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

RNA polymerase III transcription factor activity 2.2737E-6 2 10 2 6292
transcription regulator activity 2.8947E-3 2 339 2 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle