YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.779035700793]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nuclear exosome (RNase complex) 5.3053E-6 2 15 2 6292
exosome (RNase complex) 6.0632E-6 2 16 2 6292
nuclear outer membrane 1.8468E-4 2 86 2 6292
nuclear membrane 2.3525E-4 2 97 2 6292
outer membrane 7.9595E-4 2 178 2 6292
organelle outer membrane 7.9595E-4 2 178 2 6292
nuclear envelope 9.9543E-4 2 199 2 6292
nuclear membrane-endoplasmic reticulum network 1.3539E-3 2 232 2 6292
cytoplasmic exosome (RNase complex) 3.811E-3 2 12 1 6292
endomembrane system 3.9918E-3 2 398 2 6292
envelope 6.43E-3 2 505 2 6292
organelle envelope 6.43E-3 2 505 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

mRNA catabolic process 1.1854E-4 2 69 2 6292
RNA catabolic process 1.5966E-4 2 80 2 6292
mRNA metabolic process 1.1408E-3 2 213 2 6292
cellular macromolecule catabolic process 1.7674E-3 2 265 2 6292
macromolecule catabolic process 2.1762E-3 2 294 2 6292
polyadenylation-dependent RNA catabolic process 2.5415E-3 2 8 1 6292
polyadenylation-dependent ncRNA catabolic process 2.5415E-3 2 8 1 6292
cellular catabolic process 4.3405E-3 2 415 2 6292
catabolic process 6.2027E-3 2 496 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

3'-5'-exoribonuclease activity 1.2783E-5 2 23 2 6292
exoribonuclease activity 1.6421E-5 2 26 2 6292
exoribonuclease activity, producing 5'-phosphomonoesters 1.6421E-5 2 26 2 6292
exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters 2.8346E-5 2 34 2 6292
3'-5' exonuclease activity 3.0063E-5 2 35 2 6292
exonuclease activity 5.2295E-5 2 46 2 6292
ribonuclease activity 5.5711E-4 2 149 2 6292
nuclease activity 9.9543E-4 2 199 2 6292
hydrolase activity, acting on ester bonds 2.929E-3 2 341 2 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle