| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.787607376075] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| RNA polymerase I transcription factor complex | 1.819E-6 | 2 | 9 | 2 | 6292 |
| nucleolar part | 5.0022E-5 | 2 | 45 | 2 | 6292 |
| transcription factor complex | 1.2556E-4 | 2 | 71 | 2 | 6292 |
| transcription factor TFIIIB complex | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| nucleolus | 1.1194E-3 | 2 | 211 | 2 | 6292 |
| RNA polymerase I upstream activating factor complex | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| nucleoplasm part | 1.5102E-3 | 2 | 245 | 2 | 6292 |
| nucleoplasm | 1.7541E-3 | 2 | 264 | 2 | 6292 |
| transcription factor TFIID complex | 4.7627E-3 | 2 | 15 | 1 | 6292 |
| nuclear lumen | 5.1728E-3 | 2 | 453 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| transcription from RNA polymerase I promoter | 2.1979E-5 | 2 | 30 | 2 | 6292 |
| transcription initiation from RNA polymerase III promoter | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| transcription, DNA-dependent | 6.3792E-3 | 2 | 503 | 2 | 6292 |
| RNA biosynthetic process | 6.5067E-3 | 2 | 508 | 2 | 6292 |
| transcription | 7.6839E-3 | 2 | 552 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| RNA polymerase I transcription factor activity | 2.2737E-6 | 2 | 10 | 2 | 6292 |
| protein homodimerization activity | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| identical protein binding | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| DNA binding | 1.6492E-3 | 2 | 256 | 2 | 6292 |
| protein dimerization activity | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| rDNA binding | 2.224E-3 | 2 | 7 | 1 | 6292 |
| transcription regulator activity | 2.8947E-3 | 2 | 339 | 2 | 6292 |
| RNA polymerase III transcription factor activity | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| DNA bending activity | 4.1283E-3 | 2 | 13 | 1 | 6292 |