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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.810902796776]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

signalosome 1.0611E-6 2 7 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

adaptation of signaling pathway by response to pheromone involved in conjugation with cellular fusion 4.5979E-6 2 14 2 6292
adaptation of signaling pathway 4.5979E-6 2 14 2 6292
regulation of signaling pathway 1.9099E-5 2 28 2 6292
response to pheromone involved in conjugation with cellular fusion 1.44E-4 2 76 2 6292
response to pheromone 2.3525E-4 2 97 2 6292
cellular response to chemical stimulus 2.8654E-4 2 107 2 6292
conjugation with cellular fusion 3.9158E-4 2 125 2 6292
conjugation 3.979E-4 2 126 2 6292
response to organic substance 4.7071E-4 2 137 2 6292
multi-organism process 5.13E-4 2 143 2 6292
signaling pathway 8.5067E-4 2 184 2 6292
sexual reproduction 1.3656E-3 2 233 2 6292
signaling 1.598E-3 2 252 2 6292
protein deneddylation 1.9064E-3 2 6 1 6292
reproduction 2.7096E-3 2 328 2 6292
cellular response to stimulus 3.6193E-3 2 379 2 6292
response to chemical stimulus 3.6769E-3 2 382 2 6292
protein modification by small protein removal 9.1975E-3 2 29 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

metalloendopeptidase activity 3.4937E-3 2 11 1 6292
metallopeptidase activity 5.0798E-3 2 16 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle