| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.816035828144] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| integral to plasma membrane | 2.0514E-5 | 2 | 29 | 2 | 6292 |
| intrinsic to plasma membrane | 2.6678E-5 | 2 | 33 | 2 | 6292 |
| plasma membrane part | 8.0641E-5 | 2 | 57 | 2 | 6292 |
| integral to membrane | 1.6363E-3 | 2 | 255 | 2 | 6292 |
| intrinsic to membrane | 1.7276E-3 | 2 | 262 | 2 | 6292 |
| plasma membrane | 1.8077E-3 | 2 | 268 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| cofactor transport | 3.3348E-6 | 2 | 12 | 2 | 6292 |
| cell wall proteoglycan metabolic process | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| betaine transport | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| carnitine transport | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| nicotinamide mononucleotide transport | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| proteoglycan metabolic process | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| cell wall hydroxyproline-rich glycoprotein metabolic process | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| quaternary ammonium group transport | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| organic cation transport | 2.5415E-3 | 2 | 8 | 1 | 6292 |
| vitamin transport | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| nucleotide transport | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| polyamine transport | 4.4455E-3 | 2 | 14 | 1 | 6292 |
| cellular cell wall macromolecule metabolic process | 7.2981E-3 | 2 | 23 | 1 | 6292 |
| cell wall macromolecule metabolic process | 7.6148E-3 | 2 | 24 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| cofactor transporter activity | 3.9411E-6 | 2 | 13 | 2 | 6292 |
| nicotinamide mononucleotide transmembrane transporter activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| quaternary ammonium group transmembrane transporter activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| carnitine transporter activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| substrate-specific transmembrane transporter activity | 1.7943E-3 | 2 | 267 | 2 | 6292 |
| organic cation transmembrane transporter activity | 2.224E-3 | 2 | 7 | 1 | 6292 |
| vitamin transporter activity | 2.224E-3 | 2 | 7 | 1 | 6292 |
| transmembrane transporter activity | 2.3578E-3 | 2 | 306 | 2 | 6292 |
| substrate-specific transporter activity | 2.8436E-3 | 2 | 336 | 2 | 6292 |
| polyamine transmembrane transporter activity | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| transporter activity | 4.1132E-3 | 2 | 404 | 2 | 6292 |