| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.827033218744] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| COQ2 |
|
|
|
| FMN1 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| microsome | 9.6001E-6 | 2 | 20 | 2 | 6292 |
| vesicular fraction | 9.6001E-6 | 2 | 20 | 2 | 6292 |
| membrane fraction | 2.0691E-4 | 2 | 91 | 2 | 6292 |
| insoluble fraction | 2.0691E-4 | 2 | 91 | 2 | 6292 |
| cell fraction | 4.1715E-4 | 2 | 129 | 2 | 6292 |
| mitochondrial membrane | 1.7808E-3 | 2 | 266 | 2 | 6292 |
| mitochondrial envelope | 2.4514E-3 | 2 | 312 | 2 | 6292 |
| mitochondrial part | 5.6881E-3 | 2 | 475 | 2 | 6292 |
| envelope | 6.43E-3 | 2 | 505 | 2 | 6292 |
| organelle envelope | 6.43E-3 | 2 | 505 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| coenzyme biosynthetic process | 7.5032E-5 | 2 | 55 | 2 | 6292 |
| oxidoreduction coenzyme metabolic process | 8.6451E-5 | 2 | 59 | 2 | 6292 |
| cofactor biosynthetic process | 1.5966E-4 | 2 | 80 | 2 | 6292 |
| FMN biosynthetic process | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| FMN metabolic process | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| coenzyme metabolic process | 3.6076E-4 | 2 | 120 | 2 | 6292 |
| cofactor metabolic process | 5.9526E-4 | 2 | 154 | 2 | 6292 |
| FADH2 metabolic process | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| riboflavin and derivative metabolic process | 2.859E-3 | 2 | 9 | 1 | 6292 |
| riboflavin and derivative biosynthetic process | 2.859E-3 | 2 | 9 | 1 | 6292 |
| quinone cofactor metabolic process | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| ubiquinone metabolic process | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| ubiquinone biosynthetic process | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| quinone cofactor biosynthetic process | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| ribonucleoside monophosphate biosynthetic process | 6.3477E-3 | 2 | 20 | 1 | 6292 |
| ribonucleoside monophosphate metabolic process | 7.9314E-3 | 2 | 25 | 1 | 6292 |
| nucleoside monophosphate biosynthetic process | 8.5646E-3 | 2 | 27 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| polyprenyltransferase activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| 4-hydroxybenzoate octaprenyltransferase activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| riboflavin kinase activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| FMN adenylyltransferase activity | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| adenylyltransferase activity | 4.1283E-3 | 2 | 13 | 1 | 6292 |
| prenyltransferase activity | 4.4455E-3 | 2 | 14 | 1 | 6292 |