| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.053] [SVM Score: 0.827698257426] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| small nucleolar ribonucleoprotein complex | 1.2915E-4 | 2 | 72 | 2 | 6292 |
| nucleolus | 1.1194E-3 | 2 | 211 | 2 | 6292 |
| nucleolar ribonuclease P complex | 2.859E-3 | 2 | 9 | 1 | 6292 |
| multimeric ribonuclease P complex | 2.859E-3 | 2 | 9 | 1 | 6292 |
| ribonuclease MRP complex | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| ribonuclease P complex | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| nuclear lumen | 5.1728E-3 | 2 | 453 | 2 | 6292 |
| ribonucleoprotein complex | 6.6615E-3 | 2 | 514 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| rRNA processing | 4.1068E-4 | 2 | 128 | 2 | 6292 |
| rRNA metabolic process | 4.7071E-4 | 2 | 137 | 2 | 6292 |
| ncRNA processing | 1.1624E-3 | 2 | 215 | 2 | 6292 |
| snoRNA 3'-end processing | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| ncRNA metabolic process | 1.6621E-3 | 2 | 257 | 2 | 6292 |
| snoRNA processing | 2.224E-3 | 2 | 7 | 1 | 6292 |
| ribosome biogenesis | 3.0157E-3 | 2 | 346 | 2 | 6292 |
| ribonucleoprotein complex biogenesis | 3.5243E-3 | 2 | 374 | 2 | 6292 |
| RNA processing | 3.6384E-3 | 2 | 380 | 2 | 6292 |
| ncRNA 3'-end processing | 3.811E-3 | 2 | 12 | 1 | 6292 |
| rRNA modification | 5.7138E-3 | 2 | 18 | 1 | 6292 |
| snoRNA metabolic process | 5.7138E-3 | 2 | 18 | 1 | 6292 |
| RNA methylation | 6.0308E-3 | 2 | 19 | 1 | 6292 |
| mRNA cleavage | 7.9314E-3 | 2 | 25 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| ribonuclease P activity | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| ribonuclease MRP activity | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| tRNA-specific ribonuclease activity | 4.7627E-3 | 2 | 15 | 1 | 6292 |
| endoribonuclease activity, producing 5'-phosphomonoesters | 5.7138E-3 | 2 | 18 | 1 | 6292 |
| endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 7.2981E-3 | 2 | 23 | 1 | 6292 |
| endoribonuclease activity | 8.5646E-3 | 2 | 27 | 1 | 6292 |