| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.83173030755] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| extrinsic to endoplasmic reticulum membrane | 5.0527E-8 | 2 | 2 | 2 | 6292 |
| extrinsic to organelle membrane | 3.3348E-6 | 2 | 12 | 2 | 6292 |
| extrinsic to membrane | 6.4422E-5 | 2 | 51 | 2 | 6292 |
| endoplasmic reticulum membrane | 4.4352E-4 | 2 | 133 | 2 | 6292 |
| endoplasmic reticulum part | 5.6464E-4 | 2 | 150 | 2 | 6292 |
| subsynaptic reticulum | 5.6464E-4 | 2 | 150 | 2 | 6292 |
| UDP-N-acetylglucosamine transferase complex | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| palmitoyltransferase complex | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| nuclear membrane-endoplasmic reticulum network | 1.3539E-3 | 2 | 232 | 2 | 6292 |
| endoplasmic reticulum | 3.3381E-3 | 2 | 364 | 2 | 6292 |
| endomembrane system | 3.9918E-3 | 2 | 398 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| protein palmitoylation | 2.5415E-3 | 2 | 8 | 1 | 6292 |
| protein amino acid palmitoylation | 2.5415E-3 | 2 | 8 | 1 | 6292 |
| dolichol-linked oligosaccharide biosynthetic process | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| oligosaccharide biosynthetic process | 5.0798E-3 | 2 | 16 | 1 | 6292 |
| protein modification process | 6.278E-3 | 2 | 499 | 2 | 6292 |
| macromolecule modification | 8.1649E-3 | 2 | 569 | 2 | 6292 |
| oligosaccharide metabolic process | 8.8811E-3 | 2 | 28 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase activity | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| acetylglucosaminyltransferase activity | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| protein-cysteine S-palmitoleyltransferase activity | 2.5415E-3 | 2 | 8 | 1 | 6292 |
| protein-cysteine S-acyltransferase activity | 2.5415E-3 | 2 | 8 | 1 | 6292 |
| palmitoyltransferase activity | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| S-acyltransferase activity | 4.1283E-3 | 2 | 13 | 1 | 6292 |
| UDP-glycosyltransferase activity | 8.5646E-3 | 2 | 27 | 1 | 6292 |