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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.833104432724]
Complex Size: 2 proteins

Complex Member Proteins

Protein

 GO Cellular Component GO Biological Process GO Molecular Function
BET2
  • Rab-protein geranylgeranyltransferase complex
    		•
  • protein amino acid geranylgeranylation
    		•
  • Rab geranylgeranyltransferase activity
    		•
    RAM2
  • protein farnesyltransferase complex
  • CAAX-protein geranylgeranyltransferase complex
    		•
  • peptide pheromone maturation
  • protein amino acid farnesylation
  • protein amino acid geranylgeranylation
    		•
  • protein geranylgeranyltransferase activity
  • protein farnesyltransferase activity
  • CAAX-protein geranylgeranyltransferase activity
    		•

    Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    protein farnesyltransferase complex 6.3568E-4 2 2 1 6292
    CAAX-protein geranylgeranyltransferase complex 6.3568E-4 2 2 1 6292
    Rab-protein geranylgeranyltransferase complex 9.5344E-4 2 3 1 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    protein geranylgeranylation 5.0527E-7 2 5 2 6292
    protein amino acid geranylgeranylation 5.0527E-7 2 5 2 6292
    protein prenylation 7.579E-7 2 6 2 6292
    protein amino acid prenylation 7.579E-7 2 6 2 6292
    lipoprotein metabolic process 6.6999E-5 2 52 2 6292
    lipoprotein biosynthetic process 6.6999E-5 2 52 2 6292
    protein amino acid lipidation 6.6999E-5 2 52 2 6292
    protein farnesylation 6.3568E-4 2 2 1 6292
    protein amino acid farnesylation 6.3568E-4 2 2 1 6292
    peptide pheromone maturation 2.859E-3 2 9 1 6292
    protein modification process 6.278E-3 2 499 2 6292
    macromolecule modification 8.1649E-3 2 569 2 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    protein geranylgeranyltransferase activity 5.0527E-7 2 5 2 6292
    protein prenyltransferase activity 7.579E-7 2 6 2 6292
    prenyltransferase activity 4.5979E-6 2 14 2 6292
    transferase activity, transferring alkyl or aryl (other than methyl) groups 3.744E-5 2 39 2 6292
    protein farnesyltransferase activity 6.3568E-4 2 2 1 6292
    CAAX-protein geranylgeranyltransferase activity 6.3568E-4 2 2 1 6292
    Rab geranylgeranyltransferase activity 9.5344E-4 2 3 1 6292
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle