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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.870102493291]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ethanol metabolic process 2.779E-6 2 11 2 6292
monohydric alcohol metabolic process 2.779E-6 2 11 2 6292
NADH oxidation 3.3348E-6 2 12 2 6292
NADH metabolic process 5.3053E-6 2 15 2 6292
fermentation 9.6001E-6 2 20 2 6292
NAD metabolic process 1.5158E-5 2 25 2 6292
nicotinamide nucleotide metabolic process 4.5626E-5 2 43 2 6292
pyridine nucleotide metabolic process 5.2295E-5 2 46 2 6292
oxidoreduction coenzyme metabolic process 8.6451E-5 2 59 2 6292
coenzyme metabolic process 3.6076E-4 2 120 2 6292
nucleotide metabolic process 4.1068E-4 2 128 2 6292
nucleoside phosphate metabolic process 4.1068E-4 2 128 2 6292
energy derivation by oxidation of organic compounds 5.5711E-4 2 149 2 6292
cofactor metabolic process 5.9526E-4 2 154 2 6292
nucleobase, nucleoside and nucleotide metabolic process 6.1875E-4 2 157 2 6292
monohydric alcohol biosynthetic process 6.3568E-4 2 2 1 6292
ethanol biosynthetic process involved in glucose fermentation to ethanol 6.3568E-4 2 2 1 6292
ethanol biosynthetic process 6.3568E-4 2 2 1 6292
generation of precursor metabolites and energy 9.5571E-4 2 195 2 6292
alcohol metabolic process 1.2172E-3 2 220 2 6292
glucose catabolic process to ethanol 2.224E-3 2 7 1 6292
glycolytic fermentation 2.5415E-3 2 8 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

alcohol dehydrogenase (NAD) activity 1.0611E-6 2 7 2 6292
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 1.3278E-4 2 73 2 6292
oxidoreductase activity, acting on CH-OH group of donors 1.6371E-4 2 81 2 6292
oxidoreductase activity 1.9877E-3 2 281 2 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle