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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.887931224472]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

fungal-type vacuole membrane 1.3647E-4 2 74 2 6292
vacuolar membrane 3.1973E-4 2 113 2 6292
vacuolar part 3.6682E-4 2 121 2 6292
fungal-type vacuole 6.2668E-4 2 158 2 6292
lytic vacuole 6.2668E-4 2 158 2 6292
storage vacuole 6.2668E-4 2 158 2 6292
vacuole 1.0983E-3 2 209 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

cellular di-, tri-valent inorganic cation homeostasis 1.0838E-4 2 66 2 6292
di-, tri-valent inorganic cation homeostasis 1.0838E-4 2 66 2 6292
cellular cation homeostasis 2.7588E-4 2 105 2 6292
cation homeostasis 2.974E-4 2 109 2 6292
cellular chemical homeostasis 3.5475E-4 2 119 2 6292
cellular ion homeostasis 3.5475E-4 2 119 2 6292
cellular homeostasis 3.6076E-4 2 120 2 6292
chemical homeostasis 3.791E-4 2 123 2 6292
ion homeostasis 3.791E-4 2 123 2 6292
intracellular sequestering of iron ion 6.3568E-4 2 2 1 6292
sequestering of metal ion 6.3568E-4 2 2 1 6292
calcium ion transport 1.5888E-3 2 5 1 6292
calcium ion homeostasis 2.859E-3 2 9 1 6292
cellular calcium ion homeostasis 2.859E-3 2 9 1 6292
divalent metal ion transport 3.1764E-3 2 10 1 6292
homeostatic process 4.1951E-3 2 408 2 6292
metal ion homeostasis 6.3477E-3 2 20 1 6292
cellular metal ion homeostasis 6.3477E-3 2 20 1 6292
regulation of biological quality 7.6561E-3 2 551 2 6292
maintenance of location in cell 8.5646E-3 2 27 1 6292
maintenance of location 8.8811E-3 2 28 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

di-, tri-valent inorganic cation transmembrane transporter activity 3.0063E-5 2 35 2 6292
metal ion transmembrane transporter activity 5.2295E-5 2 46 2 6292
inorganic cation transmembrane transporter activity 2.5516E-4 2 101 2 6292
cation transmembrane transporter activity 3.4879E-4 2 118 2 6292
ion transmembrane transporter activity 5.3483E-4 2 146 2 6292
calcium-transporting ATPase activity 6.3568E-4 2 2 1 6292
calcium ion transmembrane transporter activity 9.5344E-4 2 3 1 6292
substrate-specific transmembrane transporter activity 1.7943E-3 2 267 2 6292
transmembrane transporter activity 2.3578E-3 2 306 2 6292
substrate-specific transporter activity 2.8436E-3 2 336 2 6292
iron ion transmembrane transporter activity 3.811E-3 2 12 1 6292
transporter activity 4.1132E-3 2 404 2 6292
ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism 4.4455E-3 2 14 1 6292
cation-transporting ATPase activity 5.0798E-3 2 16 1 6292
transition metal ion transmembrane transporter activity 8.8811E-3 2 28 1 6292
ATPase activity, coupled to transmembrane movement of ions 9.1975E-3 2 29 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle