| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.904433511637] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| LEU5 |
|
|
|
| YIA6 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| mitochondrial inner membrane | 7.6048E-4 | 2 | 174 | 2 | 6292 |
| organelle inner membrane | 8.5997E-4 | 2 | 185 | 2 | 6292 |
| mitochondrial membrane | 1.7808E-3 | 2 | 266 | 2 | 6292 |
| mitochondrial envelope | 2.4514E-3 | 2 | 312 | 2 | 6292 |
| mitochondrial part | 5.6881E-3 | 2 | 475 | 2 | 6292 |
| organelle envelope | 6.43E-3 | 2 | 505 | 2 | 6292 |
| envelope | 6.43E-3 | 2 | 505 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| cofactor transport | 3.3348E-6 | 2 | 12 | 2 | 6292 |
| coenzyme A transport | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| mitochondrial pyruvate transport | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| coenzyme transport | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| pyruvate transport | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| NAD transport | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| organic anion transport | 2.224E-3 | 2 | 7 | 1 | 6292 |
| monocarboxylic acid transport | 4.4455E-3 | 2 | 14 | 1 | 6292 |
| anion transport | 7.9314E-3 | 2 | 25 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| cofactor transporter activity | 3.9411E-6 | 2 | 13 | 2 | 6292 |
| pyruvate secondary active transmembrane transporter activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| coenzyme transporter activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| coenzyme A transmembrane transporter activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| pyruvate transmembrane transporter activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| NAD transporter activity | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| substrate-specific transmembrane transporter activity | 1.7943E-3 | 2 | 267 | 2 | 6292 |
| transmembrane transporter activity | 2.3578E-3 | 2 | 306 | 2 | 6292 |
| substrate-specific transporter activity | 2.8436E-3 | 2 | 336 | 2 | 6292 |
| transporter activity | 4.1132E-3 | 2 | 404 | 2 | 6292 |
| monocarboxylic acid transmembrane transporter activity | 4.4455E-3 | 2 | 14 | 1 | 6292 |
| secondary active transmembrane transporter activity | 8.248E-3 | 2 | 26 | 1 | 6292 |