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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.941659536582]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

COPI coated vesicle membrane 1.819E-6 2 9 2 6292
COPI vesicle coat 1.819E-6 2 9 2 6292
Golgi-associated vesicle membrane 6.0632E-6 2 16 2 6292
COPI-coated vesicle 1.0611E-5 2 21 2 6292
vesicle coat 2.8346E-5 2 34 2 6292
coated vesicle membrane 3.0063E-5 2 35 2 6292
cytoplasmic vesicle membrane 3.0063E-5 2 35 2 6292
vesicle membrane 3.0063E-5 2 35 2 6292
membrane coat 3.552E-5 2 38 2 6292
coated membrane 3.552E-5 2 38 2 6292
cytoplasmic vesicle part 3.744E-5 2 39 2 6292
Golgi-associated vesicle 3.9411E-5 2 40 2 6292
Golgi membrane 5.9419E-5 2 49 2 6292
coated vesicle 1.7194E-4 2 83 2 6292
endosome 2.2085E-4 2 94 2 6292
cytoplasmic vesicle 2.8654E-4 2 107 2 6292
membrane-bounded vesicle 2.8654E-4 2 107 2 6292
cytoplasmic membrane-bounded vesicle 2.8654E-4 2 107 2 6292
vesicle 3.0291E-4 2 110 2 6292
Golgi apparatus part 3.5475E-4 2 119 2 6292
Golgi apparatus 7.3441E-4 2 171 2 6292
endomembrane system 3.9918E-3 2 398 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ER to Golgi vesicle-mediated transport 1.7194E-4 2 83 2 6292
Golgi vesicle transport 7.0879E-4 2 168 2 6292
vesicle coating 1.2712E-3 2 4 1 6292
membrane budding 1.5888E-3 2 5 1 6292
vesicle-mediated transport 2.9119E-3 2 340 2 6292
intracellular transport 7.7118E-3 2 553 2 6292
retrograde vesicle-mediated transport, Golgi to ER 8.248E-3 2 26 1 6292
establishment of localization in cell 9.0494E-3 2 599 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle