| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.94445729] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| NFI1 |
|
|
|
| SIZ1 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| nuclear chromatin | 1.3278E-4 | 2 | 73 | 2 | 6292 |
| chromatin | 1.4784E-4 | 2 | 77 | 2 | 6292 |
| nuclear chromosome part | 9.0721E-4 | 2 | 190 | 2 | 6292 |
| nuclear chromosome | 1.3075E-3 | 2 | 228 | 2 | 6292 |
| chromosomal part | 1.413E-3 | 2 | 237 | 2 | 6292 |
| chromosome | 1.8898E-3 | 2 | 274 | 2 | 6292 |
| septin ring | 4.7627E-3 | 2 | 15 | 1 | 6292 |
| septin cytoskeleton | 4.7627E-3 | 2 | 15 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| protein sumoylation | 2.2737E-6 | 2 | 10 | 2 | 6292 |
| protein modification by small protein conjugation | 1.8468E-4 | 2 | 86 | 2 | 6292 |
| protein modification by small protein conjugation or removal | 3.2544E-4 | 2 | 114 | 2 | 6292 |
| chromosome segregation | 4.1068E-4 | 2 | 128 | 2 | 6292 |
| post-translational protein modification | 3.2108E-3 | 2 | 357 | 2 | 6292 |
| chromosome condensation | 4.1283E-3 | 2 | 13 | 1 | 6292 |
| protein modification process | 6.278E-3 | 2 | 499 | 2 | 6292 |
| macromolecule modification | 8.1649E-3 | 2 | 569 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| SUMO ligase activity | 5.0527E-7 | 2 | 5 | 2 | 6292 |
| small conjugating protein ligase activity | 9.5546E-5 | 2 | 62 | 2 | 6292 |
| acid-amino acid ligase activity | 1.2556E-4 | 2 | 71 | 2 | 6292 |
| ligase activity, forming carbon-nitrogen bonds | 2.2085E-4 | 2 | 94 | 2 | 6292 |
| ligase activity | 5.6464E-4 | 2 | 150 | 2 | 6292 |