YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.944684203872]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

cytosol 2.0305E-3 2 284 2 6292
mitochondrial envelope 2.4514E-3 2 312 2 6292
mitochondrial part 5.6881E-3 2 475 2 6292
envelope 6.43E-3 2 505 2 6292
organelle envelope 6.43E-3 2 505 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

intracellular copper ion transport 5.0527E-7 2 5 2 6292
copper ion transport 3.3348E-6 2 12 2 6292
transition metal ion transport 4.5626E-5 2 43 2 6292
metal ion transport 8.3521E-5 2 58 2 6292
cation transport 2.256E-4 2 95 2 6292
ion transport 3.6076E-4 2 120 2 6292
respiratory chain complex IV assembly 2.5415E-3 2 8 1 6292
intracellular transport 7.7118E-3 2 553 2 6292
establishment of localization in cell 9.0494E-3 2 599 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

copper chaperone activity 1.5158E-7 2 3 2 6292
metallochaperone activity 3.0316E-7 2 4 2 6292
copper ion binding 1.819E-6 2 9 2 6292
transition metal ion binding 1.3945E-5 2 24 2 6292
metal ion binding 7.5032E-5 2 55 2 6292
ion binding 7.7811E-5 2 56 2 6292
cation binding 7.7811E-5 2 56 2 6292
superoxide dismutase copper chaperone activity 3.1786E-4 2 1 1 6292
thioredoxin peroxidase activity 2.859E-3 2 9 1 6292
peroxiredoxin activity 2.859E-3 2 9 1 6292
peroxidase activity 6.3477E-3 2 20 1 6292
oxidoreductase activity, acting on peroxide as acceptor 6.3477E-3 2 20 1 6292
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen 7.2981E-3 2 23 1 6292
antioxidant activity 7.9314E-3 2 25 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle