| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.960761523675] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| YDC1 |
|
|
|
| YPC1 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| endoplasmic reticulum | 3.3381E-3 | 2 | 364 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| ceramide metabolic process | 1.0611E-6 | 2 | 7 | 2 | 6292 |
| sphingoid metabolic process | 1.819E-6 | 2 | 9 | 2 | 6292 |
| sphingolipid metabolic process | 2.1979E-5 | 2 | 30 | 2 | 6292 |
| membrane lipid metabolic process | 2.1979E-5 | 2 | 30 | 2 | 6292 |
| cellular lipid metabolic process | 8.5067E-4 | 2 | 184 | 2 | 6292 |
| lipid metabolic process | 1.4491E-3 | 2 | 240 | 2 | 6292 |
| response to heat | 7.6148E-3 | 2 | 24 | 1 | 6292 |
| response to temperature stimulus | 9.8303E-3 | 2 | 31 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| ceramidase activity | 5.0527E-8 | 2 | 2 | 2 | 6292 |
| hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | 5.6994E-5 | 2 | 48 | 2 | 6292 |
| hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | 1.5966E-4 | 2 | 80 | 2 | 6292 |