| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.962726279099] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| histone acetyltransferase complex | 4.7798E-5 | 2 | 44 | 2 | 6292 |
| nucleoplasm part | 1.5102E-3 | 2 | 245 | 2 | 6292 |
| Ada2/Gcn5/Ada3 transcription activator complex | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| nucleoplasm | 1.7541E-3 | 2 | 264 | 2 | 6292 |
| Ino80 complex | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| DNA helicase complex | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| NuA4 histone acetyltransferase complex | 4.4455E-3 | 2 | 14 | 1 | 6292 |
| H4/H2A histone acetyltransferase complex | 4.4455E-3 | 2 | 14 | 1 | 6292 |
| Swr1 complex | 4.7627E-3 | 2 | 15 | 1 | 6292 |
| SLIK (SAGA-like) complex | 5.0798E-3 | 2 | 16 | 1 | 6292 |
| nuclear lumen | 5.1728E-3 | 2 | 453 | 2 | 6292 |
| SAGA complex | 6.9813E-3 | 2 | 22 | 1 | 6292 |
| SAGA-type complex | 7.2981E-3 | 2 | 23 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| histone acetylation | 3.1832E-5 | 2 | 36 | 2 | 6292 |
| protein amino acid acetylation | 5.2295E-5 | 2 | 46 | 2 | 6292 |
| protein amino acid acylation | 8.6451E-5 | 2 | 59 | 2 | 6292 |
| covalent chromatin modification | 1.9342E-4 | 2 | 88 | 2 | 6292 |
| histone modification | 1.9342E-4 | 2 | 88 | 2 | 6292 |
| chromatin modification | 7.0879E-4 | 2 | 168 | 2 | 6292 |
| chromatin organization | 1.036E-3 | 2 | 203 | 2 | 6292 |
| post-translational protein modification | 3.2108E-3 | 2 | 357 | 2 | 6292 |
| protein modification process | 6.278E-3 | 2 | 499 | 2 | 6292 |
| chromosome organization | 7.7677E-3 | 2 | 555 | 2 | 6292 |
| macromolecule modification | 8.1649E-3 | 2 | 569 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| histone acetyltransferase activity | 6.8716E-6 | 2 | 17 | 2 | 6292 |
| lysine N-acetyltransferase activity | 6.8716E-6 | 2 | 17 | 2 | 6292 |
| N-acetyltransferase activity | 2.6678E-5 | 2 | 33 | 2 | 6292 |
| N-acyltransferase activity | 3.552E-5 | 2 | 38 | 2 | 6292 |
| acetyltransferase activity | 6.1895E-5 | 2 | 50 | 2 | 6292 |
| transferase activity, transferring acyl groups other than amino-acyl groups | 2.1151E-4 | 2 | 92 | 2 | 6292 |
| acyltransferase activity | 2.1151E-4 | 2 | 92 | 2 | 6292 |
| transferase activity, transferring acyl groups | 2.8654E-4 | 2 | 107 | 2 | 6292 |
| ATP-dependent 5'-3' DNA helicase activity | 2.224E-3 | 2 | 7 | 1 | 6292 |
| 5'-3' DNA helicase activity | 2.5415E-3 | 2 | 8 | 1 | 6292 |
| ATP-dependent DNA helicase activity | 5.7138E-3 | 2 | 18 | 1 | 6292 |
| transcription coactivator activity | 6.6645E-3 | 2 | 21 | 1 | 6292 |