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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 1.00141791668]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

clathrin vesicle coat 4.5979E-6 2 14 2 6292
clathrin coat 4.5979E-6 2 14 2 6292
clathrin coated vesicle membrane 5.3053E-6 2 15 2 6292
clathrin-coated vesicle 2.3495E-5 2 31 2 6292
vesicle coat 2.8346E-5 2 34 2 6292
coated vesicle membrane 3.0063E-5 2 35 2 6292
cytoplasmic vesicle membrane 3.0063E-5 2 35 2 6292
vesicle membrane 3.0063E-5 2 35 2 6292
membrane coat 3.552E-5 2 38 2 6292
coated membrane 3.552E-5 2 38 2 6292
cytoplasmic vesicle part 3.744E-5 2 39 2 6292
coated vesicle 1.7194E-4 2 83 2 6292
membrane-bounded vesicle 2.8654E-4 2 107 2 6292
cytoplasmic vesicle 2.8654E-4 2 107 2 6292
cytoplasmic membrane-bounded vesicle 2.8654E-4 2 107 2 6292
vesicle 3.0291E-4 2 110 2 6292
clathrin coat of trans-Golgi network vesicle 1.9064E-3 2 6 1 6292
AP-1 adaptor complex 1.9064E-3 2 6 1 6292
trans-Golgi network transport vesicle membrane 2.224E-3 2 7 1 6292
clathrin adaptor complex 3.1764E-3 2 10 1 6292
trans-Golgi network transport vesicle 3.4937E-3 2 11 1 6292
endomembrane system 3.9918E-3 2 398 2 6292
AP-type membrane coat adaptor complex 4.4455E-3 2 14 1 6292
transport vesicle membrane 4.7627E-3 2 15 1 6292
Golgi-associated vesicle membrane 5.0798E-3 2 16 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

post-Golgi vesicle-mediated transport 1.151E-4 2 68 2 6292
Golgi vesicle transport 7.0879E-4 2 168 2 6292
vesicle-mediated transport 2.9119E-3 2 340 2 6292
Golgi to endosome transport 3.4937E-3 2 11 1 6292
Golgi to vacuole transport 7.6148E-3 2 24 1 6292
intracellular transport 7.7118E-3 2 553 2 6292
establishment of localization in cell 9.0494E-3 2 599 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

clathrin binding 2.779E-6 2 11 2 6292
protein binding 9.4468E-3 2 612 2 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle