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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 1.19683529394]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

integral to plasma membrane 2.0514E-5 2 29 2 6292
intrinsic to plasma membrane 2.6678E-5 2 33 2 6292
plasma membrane part 8.0641E-5 2 57 2 6292
integral to membrane 1.6363E-3 2 255 2 6292
intrinsic to membrane 1.7276E-3 2 262 2 6292
plasma membrane 1.8077E-3 2 268 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

drug transmembrane transport 1.4147E-6 2 8 2 6292
drug transport 3.9411E-6 2 13 2 6292
transmembrane transport 1.7194E-4 2 83 2 6292
response to drug 4.1068E-4 2 128 2 6292
response to chemical stimulus 3.6769E-3 2 382 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

drug transmembrane transporter activity 4.5979E-6 2 14 2 6292
transmembrane transporter activity 2.3578E-3 2 306 2 6292
transporter activity 4.1132E-3 2 404 2 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle