From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 1.34133369337] |
Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
CAAX-protein geranylgeranyltransferase complex | 5.0527E-8 | 2 | 2 | 2 | 6292 |
protein farnesyltransferase complex | 6.3568E-4 | 2 | 2 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
protein geranylgeranylation | 5.0527E-7 | 2 | 5 | 2 | 6292 |
protein amino acid geranylgeranylation | 5.0527E-7 | 2 | 5 | 2 | 6292 |
protein prenylation | 7.579E-7 | 2 | 6 | 2 | 6292 |
protein amino acid prenylation | 7.579E-7 | 2 | 6 | 2 | 6292 |
protein amino acid lipidation | 6.6999E-5 | 2 | 52 | 2 | 6292 |
lipoprotein metabolic process | 6.6999E-5 | 2 | 52 | 2 | 6292 |
lipoprotein biosynthetic process | 6.6999E-5 | 2 | 52 | 2 | 6292 |
protein farnesylation | 6.3568E-4 | 2 | 2 | 1 | 6292 |
protein amino acid farnesylation | 6.3568E-4 | 2 | 2 | 1 | 6292 |
calcium ion homeostasis | 2.859E-3 | 2 | 9 | 1 | 6292 |
peptide pheromone maturation | 2.859E-3 | 2 | 9 | 1 | 6292 |
cellular calcium ion homeostasis | 2.859E-3 | 2 | 9 | 1 | 6292 |
protein modification process | 6.278E-3 | 2 | 499 | 2 | 6292 |
metal ion homeostasis | 6.3477E-3 | 2 | 20 | 1 | 6292 |
cellular metal ion homeostasis | 6.3477E-3 | 2 | 20 | 1 | 6292 |
macromolecule modification | 8.1649E-3 | 2 | 569 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
CAAX-protein geranylgeranyltransferase activity | 5.0527E-8 | 2 | 2 | 2 | 6292 |
protein geranylgeranyltransferase activity | 5.0527E-7 | 2 | 5 | 2 | 6292 |
protein prenyltransferase activity | 7.579E-7 | 2 | 6 | 2 | 6292 |
prenyltransferase activity | 4.5979E-6 | 2 | 14 | 2 | 6292 |
transferase activity, transferring alkyl or aryl (other than methyl) groups | 3.744E-5 | 2 | 39 | 2 | 6292 |
protein farnesyltransferase activity | 6.3568E-4 | 2 | 2 | 1 | 6292 |