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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 1.44732324865]
Complex Size: 2 proteins

Complex Member Proteins

Protein

 GO Cellular Component GO Biological Process GO Molecular Function
ERF2
  • integral to endoplasmic reticulum membrane
  • palmitoyltransferase complex
    		•
  • protein amino acid palmitoylation
  • protein targeting to membrane
    		•
  • protein-cysteine S-palmitoleyltransferase activity
    		•
    SHR5
  • extrinsic to endoplasmic reticulum membrane
  • palmitoyltransferase complex
    		•
  • protein amino acid palmitoylation
  • protein localization
  • Ras protein signal transduction
    		•
  • protein-cysteine S-palmitoleyltransferase activity
    		•

    Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    palmitoyltransferase complex 3.0316E-7 2 4 2 6292
    endoplasmic reticulum membrane 4.4352E-4 2 133 2 6292
    endoplasmic reticulum part 5.6464E-4 2 150 2 6292
    subsynaptic reticulum 5.6464E-4 2 150 2 6292
    extrinsic to endoplasmic reticulum membrane 6.3568E-4 2 2 1 6292
    nuclear membrane-endoplasmic reticulum network 1.3539E-3 2 232 2 6292
    endoplasmic reticulum 3.3381E-3 2 364 2 6292
    extrinsic to organelle membrane 3.811E-3 2 12 1 6292
    endomembrane system 3.9918E-3 2 398 2 6292
    integral to endoplasmic reticulum membrane 9.8303E-3 2 31 1 6292
    intrinsic to endoplasmic reticulum membrane 9.8303E-3 2 31 1 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    protein palmitoylation 1.4147E-6 2 8 2 6292
    protein amino acid palmitoylation 1.4147E-6 2 8 2 6292
    protein amino acid lipidation 6.6999E-5 2 52 2 6292
    lipoprotein metabolic process 6.6999E-5 2 52 2 6292
    lipoprotein biosynthetic process 6.6999E-5 2 52 2 6292
    protein amino acid acylation 8.6451E-5 2 59 2 6292
    protein localization 2.3118E-3 2 303 2 6292
    macromolecule localization 3.9717E-3 2 397 2 6292
    protein modification process 6.278E-3 2 499 2 6292
    macromolecule modification 8.1649E-3 2 569 2 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    protein-cysteine S-palmitoleyltransferase activity 1.4147E-6 2 8 2 6292
    protein-cysteine S-acyltransferase activity 1.4147E-6 2 8 2 6292
    palmitoyltransferase activity 2.779E-6 2 11 2 6292
    S-acyltransferase activity 3.9411E-6 2 13 2 6292
    transferase activity, transferring acyl groups other than amino-acyl groups 2.1151E-4 2 92 2 6292
    acyltransferase activity 2.1151E-4 2 92 2 6292
    transferase activity, transferring acyl groups 2.8654E-4 2 107 2 6292
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle