From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 1.58541706147] |
Complex Size: | 2 proteins |
Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
TFC1 |
|
|
|
TFC4 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
transcription factor TFIIIC complex | 7.579E-7 | 2 | 6 | 2 | 6292 |
transcription factor complex | 1.2556E-4 | 2 | 71 | 2 | 6292 |
nucleoplasm part | 1.5102E-3 | 2 | 245 | 2 | 6292 |
nucleoplasm | 1.7541E-3 | 2 | 264 | 2 | 6292 |
nuclear lumen | 5.1728E-3 | 2 | 453 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
transcription initiation from RNA polymerase III promoter | 2.779E-6 | 2 | 11 | 2 | 6292 |
transcription from RNA polymerase III promoter | 3.552E-5 | 2 | 38 | 2 | 6292 |
transcription initiation | 8.3521E-5 | 2 | 58 | 2 | 6292 |
protein complex assembly | 6.0304E-4 | 2 | 155 | 2 | 6292 |
protein complex biogenesis | 6.0304E-4 | 2 | 155 | 2 | 6292 |
macromolecular complex assembly | 1.9877E-3 | 2 | 281 | 2 | 6292 |
macromolecular complex subunit organization | 3.2108E-3 | 2 | 357 | 2 | 6292 |
cellular component assembly | 3.7349E-3 | 2 | 385 | 2 | 6292 |
transcription, DNA-dependent | 6.3792E-3 | 2 | 503 | 2 | 6292 |
RNA biosynthetic process | 6.5067E-3 | 2 | 508 | 2 | 6292 |
transcription | 7.6839E-3 | 2 | 552 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
RNA polymerase III transcription factor activity | 2.2737E-6 | 2 | 10 | 2 | 6292 |
transcription regulator activity | 2.8947E-3 | 2 | 339 | 2 | 6292 |