| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 1.66689886119] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| alpha,alpha-trehalose-phosphate synthase complex (UDP-forming) | 3.0316E-7 | 2 | 4 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| trehalose biosynthetic process | 7.579E-7 | 2 | 6 | 2 | 6292 |
| disaccharide biosynthetic process | 7.579E-7 | 2 | 6 | 2 | 6292 |
| glycoside biosynthetic process | 7.579E-7 | 2 | 6 | 2 | 6292 |
| trehalose metabolic process | 1.819E-6 | 2 | 9 | 2 | 6292 |
| glycoside metabolic process | 2.2737E-6 | 2 | 10 | 2 | 6292 |
| disaccharide metabolic process | 3.9411E-6 | 2 | 13 | 2 | 6292 |
| oligosaccharide biosynthetic process | 6.0632E-6 | 2 | 16 | 2 | 6292 |
| oligosaccharide metabolic process | 1.9099E-5 | 2 | 28 | 2 | 6292 |
| cellular carbohydrate biosynthetic process | 1.5173E-4 | 2 | 78 | 2 | 6292 |
| carbohydrate biosynthetic process | 2.0691E-4 | 2 | 91 | 2 | 6292 |
| cellular carbohydrate metabolic process | 1.7276E-3 | 2 | 262 | 2 | 6292 |
| carbohydrate metabolic process | 1.9877E-3 | 2 | 281 | 2 | 6292 |
| response to stress | 6.2277E-3 | 2 | 497 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| trehalose-phosphatase activity | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| carbohydrate phosphatase activity | 2.224E-3 | 2 | 7 | 1 | 6292 |
| UDP-glucosyltransferase activity | 4.4455E-3 | 2 | 14 | 1 | 6292 |
| glucosyltransferase activity | 5.0798E-3 | 2 | 16 | 1 | 6292 |
| UDP-glycosyltransferase activity | 8.5646E-3 | 2 | 27 | 1 | 6292 |