From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 1.67819301539] |
Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
protein phosphatase type 1 complex | 1.0611E-6 | 2 | 7 | 2 | 6292 |
protein serine/threonine phosphatase complex | 6.8716E-6 | 2 | 17 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
energy reserve metabolic process | 2.5061E-5 | 2 | 32 | 2 | 6292 |
glycogen metabolic process | 2.5061E-5 | 2 | 32 | 2 | 6292 |
glucan metabolic process | 4.5626E-5 | 2 | 43 | 2 | 6292 |
cellular glucan metabolic process | 4.5626E-5 | 2 | 43 | 2 | 6292 |
cellular polysaccharide metabolic process | 7.5032E-5 | 2 | 55 | 2 | 6292 |
polysaccharide metabolic process | 8.9432E-5 | 2 | 60 | 2 | 6292 |
glucose metabolic process | 2.974E-4 | 2 | 109 | 2 | 6292 |
hexose metabolic process | 3.8532E-4 | 2 | 124 | 2 | 6292 |
monosaccharide metabolic process | 4.5701E-4 | 2 | 135 | 2 | 6292 |
energy derivation by oxidation of organic compounds | 5.5711E-4 | 2 | 149 | 2 | 6292 |
generation of precursor metabolites and energy | 9.5571E-4 | 2 | 195 | 2 | 6292 |
alcohol metabolic process | 1.2172E-3 | 2 | 220 | 2 | 6292 |
cellular carbohydrate metabolic process | 1.7276E-3 | 2 | 262 | 2 | 6292 |
carbohydrate metabolic process | 1.9877E-3 | 2 | 281 | 2 | 6292 |
vacuolar protein catabolic process | 4.4455E-3 | 2 | 14 | 1 | 6292 |
protein amino acid dephosphorylation | 8.8811E-3 | 2 | 28 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
phosphatase regulator activity | 1.2783E-5 | 2 | 23 | 2 | 6292 |
protein phosphatase regulator activity | 1.2783E-5 | 2 | 23 | 2 | 6292 |
enzyme regulator activity | 1.0773E-3 | 2 | 207 | 2 | 6292 |
protein phosphatase type 1 regulator activity | 3.811E-3 | 2 | 12 | 1 | 6292 |