| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classfier did not use Gene Ontology annotations. [FDR: 0.021] [SVM Score: 0.448451661806] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| nucleolus | 1.1194E-3 | 2 | 211 | 2 | 6292 |
| TRAMP complex | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| nuclear lumen | 5.1728E-3 | 2 | 453 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| tRNA catabolic process | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| ncRNA polyadenylation | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| ncRNA catabolic process | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| ncRNA polyadenylation involved in polyadenylation-dependent ncRNA catabolic process | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| rRNA catabolic process | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| polyadenylation-dependent RNA catabolic process | 2.5415E-3 | 2 | 8 | 1 | 6292 |
| polyadenylation-dependent ncRNA catabolic process | 2.5415E-3 | 2 | 8 | 1 | 6292 |
| ribosome biogenesis | 3.0157E-3 | 2 | 346 | 2 | 6292 |
| ribonucleoprotein complex biogenesis | 3.5243E-3 | 2 | 374 | 2 | 6292 |
| ncRNA 3'-end processing | 3.811E-3 | 2 | 12 | 1 | 6292 |
| RNA polyadenylation | 8.248E-3 | 2 | 26 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| RNA helicase activity | 4.3504E-5 | 2 | 42 | 2 | 6292 |
| helicase activity | 1.7194E-4 | 2 | 83 | 2 | 6292 |
| nucleoside-triphosphatase activity | 2.7262E-3 | 2 | 329 | 2 | 6292 |
| hydrolase activity, acting on acid anhydrides | 3.1391E-3 | 2 | 353 | 2 | 6292 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 3.1391E-3 | 2 | 353 | 2 | 6292 |
| pyrophosphatase activity | 3.1391E-3 | 2 | 353 | 2 | 6292 |
| ATP-dependent RNA helicase activity | 8.8811E-3 | 2 | 28 | 1 | 6292 |
| RNA-dependent ATPase activity | 9.1975E-3 | 2 | 29 | 1 | 6292 |