From Publication:  Qiu J, Noble WS (2008) Predicting CoComplexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 
Notes:  Classfier did not use Gene Ontology annotations. [FDR: 0.021] [SVM Score: 0.490523866326] 
Complex Size:  2 proteins 
Protein 
GO Cellular Component  GO Biological Process  GO Molecular Function 
RCL1 



UTP9 



Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the pvalue represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a pvalue less than or equal to 0.01.
GO Term 
Pvalue 
A 
B 
I 
T 
nucleolus  1.1194E3  2  211  2  6292 
nuclear lumen  5.1728E3  2  453  2  6292 
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the pvalue represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a pvalue less than or equal to 0.01.
GO Term 
Pvalue 
A 
B 
I 
T 
ribosome biogenesis  3.0157E3  2  346  2  6292 
ribonucleoprotein complex biogenesis  3.5243E3  2  374  2  6292 
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the pvalue represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a pvalue less than or equal to 0.01.
GO Term 
Pvalue 
A 
B 
I 
T 
RNA3'phosphate cyclase activity  3.1786E4  2  1  1  6292 
cyclase activity  6.3568E4  2  2  1  6292 
ligase activity, forming phosphoric ester bonds  1.2712E3  2  4  1  6292 
snoRNA binding  9.8303E3  2  31  1  6292 