From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classfier did not use Gene Ontology annotations. [FDR: 0.021] [SVM Score: 0.696413907253] |
Complex Size: | 2 proteins |
Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
RKI1 |
|
|
|
RRP5 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
pyridoxine biosynthetic process | 3.1786E-4 | 2 | 1 | 1 | 6292 |
vitamin B6 biosynthetic process | 3.1786E-4 | 2 | 1 | 1 | 6292 |
vitamin B6 metabolic process | 2.5415E-3 | 2 | 8 | 1 | 6292 |
pyridoxine metabolic process | 2.5415E-3 | 2 | 8 | 1 | 6292 |
ribosome biogenesis | 3.0157E-3 | 2 | 346 | 2 | 6292 |
ribonucleoprotein complex biogenesis | 3.5243E-3 | 2 | 374 | 2 | 6292 |
pentose-phosphate shunt | 3.811E-3 | 2 | 12 | 1 | 6292 |
NADPH regeneration | 4.7627E-3 | 2 | 15 | 1 | 6292 |
NADP metabolic process | 5.7138E-3 | 2 | 18 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
ribose-5-phosphate isomerase activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
rRNA primary transcript binding | 1.5888E-3 | 2 | 5 | 1 | 6292 |
intramolecular oxidoreductase activity, interconverting aldoses and ketoses | 3.1764E-3 | 2 | 10 | 1 | 6292 |
rRNA binding | 5.0798E-3 | 2 | 16 | 1 | 6292 |
intramolecular oxidoreductase activity | 6.0308E-3 | 2 | 19 | 1 | 6292 |
snoRNA binding | 9.8303E-3 | 2 | 31 | 1 | 6292 |