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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classfier did not use Gene Ontology annotations. [FDR: 0.021] [SVM Score: 0.821137200945]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

signal recognition particle 1.0611E-6 2 7 2 6292
signal recognition particle, endoplasmic reticulum targeting 1.0611E-6 2 7 2 6292
ribonucleoprotein complex 6.6615E-3 2 514 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition 1.0611E-6 2 7 2 6292
SRP-dependent cotranslational protein targeting to membrane 1.0611E-5 2 21 2 6292
cotranslational protein targeting to membrane 1.3945E-5 2 24 2 6292
protein targeting to ER 2.6678E-5 2 33 2 6292
protein localization in endoplasmic reticulum 3.9411E-5 2 40 2 6292
protein targeting to membrane 6.6999E-5 2 52 2 6292
cellular protein complex assembly 7.2304E-5 2 54 2 6292
protein localization in organelle 5.5711E-4 2 149 2 6292
protein complex assembly 6.0304E-4 2 155 2 6292
protein complex biogenesis 6.0304E-4 2 155 2 6292
cellular macromolecular complex assembly 8.3223E-4 2 182 2 6292
protein targeting 1.3892E-3 2 235 2 6292
intracellular protein transport 1.6363E-3 2 255 2 6292
cellular macromolecular complex subunit organization 1.6882E-3 2 259 2 6292
protein transport 1.8213E-3 2 269 2 6292
establishment of protein localization 1.8485E-3 2 271 2 6292
cellular protein localization 1.8898E-3 2 274 2 6292
macromolecular complex assembly 1.9877E-3 2 281 2 6292
cellular macromolecule localization 2.0305E-3 2 284 2 6292
protein localization 2.3118E-3 2 303 2 6292
macromolecular complex subunit organization 3.2108E-3 2 357 2 6292
cellular component assembly 3.7349E-3 2 385 2 6292
macromolecule localization 3.9717E-3 2 397 2 6292
intracellular transport 7.7118E-3 2 553 2 6292
establishment of localization in cell 9.0494E-3 2 599 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

peptide binding 7.7306E-6 2 18 2 6292
signal sequence binding 7.7306E-6 2 18 2 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle