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View Protein Complex Details

Complex Overview

From Publication: Ho Y. et al. (2002) Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature. 2002 Jan 10;415(6868):180-3.
Notes: This molecular complex record represents a population of complexes co-purified by immunoprecipitation of FLAG-tagged Lsm2. The topolgies of protein complexes in this experiment are unknown.
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

mRNA cap binding complex 9.5344E-4 2 3 1 6292
RNA cap binding complex 1.9064E-3 2 6 1 6292
U6 snRNP 3.4937E-3 2 11 1 6292
cytoplasmic mRNA processing body 4.7627E-3 2 15 1 6292
ribonucleoprotein complex 6.6615E-3 2 514 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

mRNA catabolic process 1.1854E-4 2 69 2 6292
RNA catabolic process 1.5966E-4 2 80 2 6292
mRNA metabolic process 1.1408E-3 2 213 2 6292
cellular macromolecule catabolic process 1.7674E-3 2 265 2 6292
macromolecule catabolic process 2.1762E-3 2 294 2 6292
deadenylation-dependent decapping of nuclear-transcribed mRNA 3.4937E-3 2 11 1 6292
cellular catabolic process 4.3405E-3 2 415 2 6292
catabolic process 6.2027E-3 2 496 2 6292
nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 8.5646E-3 2 27 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

RNA cap binding 6.3568E-4 2 2 1 6292
RNA binding 3.3934E-3 2 367 2 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle